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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgttatgatcctttgtctccatttatttatagtttgtgtatgttaacatataccgatgtgtgtgtgatatacgcatatagaataaagaatataga...

Basic information

species Vitis vinifera
transcript Vv08s0040g02470.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G05130.2 (Glycine max), 5'ss of exon 7
------------------ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgttatgatcctttgtctccatttatttatagtttgtgtatgttaacatataccgatgtgtgtgtgatatacgcatatagaataaagaatataga---------------
                  ||||||| ||||||||||||||||||||||| ||||||||||| ||  ||||   ||| ||||| || ||| ||||||||||||||||   |     |    ||   |||  || |  ||||   | |    || |||     | |   || |  | |   ||||  | |  | ||  |                  
CCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaacagccatcggattcatgattatttcaaggtttcaattttaatacttatgtttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgaag

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G05130.1 (Glycine max), 5'ss of exon 8
ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgttatgatcctttgtctccatttatttatagtttgtgtatgttaacatataccgatgtgtgtgtgatatacgcatatagaataaagaatataga---------------
||||||| ||||||||||||||||||||||| ||||||||||| ||  ||||   ||| ||||| || ||| ||||||||||||||||   |     |    ||   |||  || |  ||||   | |    || |||     | |   || |  | |   ||||  | |  | ||  |                  
ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaacagccatcggattcatgattatttcaaggtttcaattttaatacttatgtttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgaag

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 8
ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta------tgatcctttgtctccat----ttatttatagtttgtgta--tgttaacatat-accgatgtgtgtgtgatatacgcatatagaataaaga-atataga----------------------------------------------------------------------------------
||||||| ||||||||||||||||||||||| ||||||||||| ||  | ||   ||| ||||| || ||| ||||||||||||||||   |      |||| | |  || | |     || |||||   ||  |||   | |||   || ||        ||   || |   ||| |    |||| |  | |  |                                                                                  
ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G19500.4 (Glycine max), 5'ss of exon 7
------------------ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta------tgatcctttgtctccat----ttatttatagtttgtgta--tgttaacatat-accgatgtgtgtgtgatatacgcatatagaataaaga-atataga----------------------------------------------------------------------------------
                  ||||||| ||||||||||||||||||||||| ||||||||||| ||  | ||   ||| ||||| || ||| ||||||||||||||||   |      |||| | |  || | |     || |||||   ||  |||   | |||   || ||        ||   || |   ||| |    |||| |  | |  |                                                                                  
TCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G19500.2 (Glycine max), 5'ss of exon 8
-------ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta------tgatcctttgtctccat----ttatttatagtttgtgta--tgttaacatat-accgatgtgtgtgtgatatacgcatatagaataaaga-atataga----------------------------------------------------------------------------------
       ||||||| ||||||||||||||||||||||| ||||||||||| ||  | ||   ||| ||||| || ||| ||||||||||||||||   |      |||| | |  || | |     || |||||   ||  |||   | |||   || ||        ||   || |   ||| |    |||| |  | |  |                                                                                  
GAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G35710.1 (Glycine max), 5'ss of exon 10
ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgttatgatcctttgtctccatttatttatagtttgtgtatgttaacatataccgatgtgtgtgtgatatacgcatatagaataaagaat-ataga
||||||| ||||| ||||||||||||||||| ||||||||| ||||  | ||   ||||| ||| ||  |  |||  |||||||||||  | |||  |     | |  |    || ||  | ||      |  |||  ||  || ||        ||  |   | |   |   || | ||  |
ACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTTGAAGCGGTTAAGCGATCCATgtaagtcctctgactcgcaaacactttactgttttacctagtcatgagtctcatg-actaatctggaaactgaattggttcaaaagtttctgattgatcta

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G35710.3 (Glycine max), 5'ss of exon 9
------------------ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgttatgatcctttgtctccatttatttatagtttgtgtatgttaacatataccgatgtgtgtgtgatatacgcatatagaataaagaat-ataga
                  ||||||| ||||| ||||||||||||||||| ||||||||| ||||  | ||   ||||| ||| ||  |  |||  |||||||||||  | |||  |     | |  |    || ||  | ||      |  |||  ||  || ||        ||  |   | |   |   || | ||  |
CCTTCATAAAGGATTTAGACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTTGAAGCGGTTAAGCGATCCATgtaagtcctctgactcgcaaacactttactgttttacctagtcatgagtctcatg-actaatctggaaactgaattggttcaaaagtttctgattgatcta

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G33000.5 (Glycine max), 5'ss of exon 9
ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgttatgatcctttgtctccatttatttatagtttgtgtatgt--taacatataccgatgtgtgtgtgatatacgcatatagaataaagaatataga
||||||| ||||| ||||||||||| ||||| ||||||||| ||||  | ||   |||||  || ||  |  |    ||||||||||||  |     ||   ||   |    ||||  ||||   |  ||  | ||  ||   ||        || |  |    | | | ||| | | ||| | 
ACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCATgtaagtggcactcctctgactcgaaaacactttaatgtttactttagtcatgactaatgtggaaactgaattggttcaaaagttttggataga-agtatgg-

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G33000.7 (Glycine max), 5'ss of exon 9
------------------ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgttatgatcctttgtctccatttatttatagtttgtgtatgtta--acatataccgatgtgtgtgtgatatacgcatatagaataaagaatataga
                  ||||||| ||||| ||||||||||| ||||| ||||||||| ||||  | ||   |||||  || ||  |  |    ||||||||||||  |     ||   ||   |    ||||  ||||   |  || |  ||  ||   ||        || |  |    | | | ||| | | ||| | 
CCTTCATAAAGGATTTAGACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCATgtaagtggcactcctctgactcgaaaacactttaatgtttactttagtcatgactaatgtggaaactgaattggttcaaaagttttggataga-agtatgg-

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G53620.1 (Arabidopsis thaliana), 5'ss of exon 8
ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtg----ttatgatcctttgtctccatttatttatagtttgtgtatgttaacatatac-cgatgtgtgtgtgatatacgcatatagaataaagaatataga----------------------
| |||||||| |||||||||||||| || ||||||||||| || ||  |  |    || || || ||| | |||||||||||||||||     | ||||  |||  | |   ||  || |||  || ||    |  | |||  | | || ||| | |   | |     |   | |||  ||  | |                       
ATAAGAAAAACGAGAACAAGGAAGTAGCCGTTAACGACTTCCTTCCGGCAACTGCAGCCTACGACGCAGTTCAGCATTCCATgtaagtagccttcatgaaacttactgttatttacttcatatattatgaccttgtaaatagccgcaatttgtttatatcaaagaataactaactaatcaaattgggacaactcttttgtgtcatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352795193|gb|FQ477303.1|FQ477303
EST:     AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|71878052|gb|DT027107.1|DT027107
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110364488|gb|EC924298.1|EC924298
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110375226|gb|EC940190.1|EC940190
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|32248919|gb|CD714738.1|CD714738
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|46919415|gb|CN548744.1|CN548744
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110428791|gb|EC995272.1|EC995272
EST:     AACGACTTTCTGCCATCTTTTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110426518|gb|EC992931.1|EC992931
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110396243|gb|EC961924.1|EC961924
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|18458285|gb|BM436563.1|BM436563
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATACTGGAGAGCCTGAGGCGGCAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|32248310|gb|CD714129.1|CD714129
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110429862|gb|EC996373.1|EC996373
EST:     AACGACTTTCTGCCATCTTTTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110695895|gb|EE074432.1|EE074432
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|33406231|gb|CF211858.1|CF211858
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGA
EST: gi|110383531|gb|EC947909.1|EC947909
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110360555|gb|EC923759.1|EC923759
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110708943|gb|EE083969.1|EE083969
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110706103|gb|EE083706.1|EE083706
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|22009034|gb|BQ794068.1|BQ794068
EST:     AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110717369|gb|EE093164.1|EE093164
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110701996|gb|EE080208.1|EE080208
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAAGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGANGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110717373|gb|EE093175.1|EE093175
EST:     ACGACTTTCTGCCATCTTCTAGTGCTTATGAANGCA-TCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGANGCGGTAGTCTGGTCA
genomic: ACGACTTTCTGCCATCTTCCAGTGCTTATGAG-GCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110714631|gb|EE091760.1|EE091760
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|32457925|gb|CD799099.1|CD799099
EST:     CTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: CTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110697749|gb|EE075008.1|EE075008
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|32272325|gb|CD721484.1|CD721484
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|32246197|gb|CD712016.1|CD712016
EST:     AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110686108|gb|EE063413.1|EE063413
EST:     ACGACTTTCTGCCATCTTCTAGTGCTTATGNAGGCA-TCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGANGCGGTAGTCTGTTCA
genomic: ACGACTTTCTGCCATCTTCCAGTGCTTATG-AGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110688777|gb|EE067713.1|EE067713
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAAGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110717105|gb|EE092669.1|EE092669
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110369553|gb|EC933716.1|EC933716
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|351025513|gb|FQ435206.1|FQ435206
EST:     AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCCT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|22012092|gb|BQ797126.1|BQ797126
EST:     CCAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGGCTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: CCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110717897|gb|EE094154.1|EE094154
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|32249271|gb|CD715090.1|CD715090
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|22008770|gb|BQ793804.1|BQ793804
EST:     AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|30136583|gb|CB921921.1|CB921921
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|22007273|gb|BQ792307.1|BQ792307
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTTTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110423615|gb|EC989962.1|EC989962
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110375052|gb|EC940007.1|EC940007
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110383209|gb|EC947567.1|EC947567
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110727272|gb|EE103839.1|EE103839
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|46918179|gb|CN547508.1|CN547508
EST:     AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|71877690|gb|DT026745.1|DT026745
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|33406869|gb|CF212496.1|CF212496
EST:     AACGACTTTTTGCCATCTTTTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110700548|gb|EE078712.1|EE078712
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTNGAG-CGGTAGTC
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCT-GAGGCGGTAGTC
EST: gi|22012657|gb|BQ797691.1|BQ797691
EST:     AGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110690416|gb|EE067494.1|EE067494
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|71878583|gb|DT027638.1|DT027638
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110715852|gb|EE094373.1|EE094373
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|33406139|gb|CF211766.1|CF211766
EST:     CAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: CAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|27581010|gb|CB003705.1|CB003705
EST:     AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|30133070|gb|CB918409.1|CB918409
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110723089|gb|EE099999.1|EE099999
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAAGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGA
EST: gi|22009038|gb|BQ794072.1|BQ794072
EST:     AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|22012127|gb|BQ797161.1|BQ797161
EST:     AATGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110397892|gb|EC963867.1|EC963867
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|351012488|gb|FQ427089.1|FQ427089
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110370417|gb|EC929648.1|EC929648
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110374151|gb|EC938723.1|EC938723
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110384899|gb|EC949367.1|EC949367
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|110706671|gb|EE082411.1|EE082411
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
EST: gi|32267585|gb|CD716548.1|CD716548
EST:     AACGACTTTCTGCCATCTTCTAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGG
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGG
EST: gi|18459161|gb|BM437439.1|BM437439
EST:     AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCAT                         GAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA
genomic: AACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta ... atttgtgaagGAATCTCTATGCGGACTATATAGTGGAGAGCCTGAGGCGGTAGTCTGTTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgttatgatcctttgtctccatttatttatagtttgtgtatgttaacatataccgatgtgtgtgtgatatacgcatatagaataaagaatataga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa