Sequence
atgc intronic sequence ATGC exonic sequenceCTGAGGTCCAGTCGAAATTTCTGCATTGATATTATTTTGTTGTGTATAATTCTGGGAATTGCTGCCTATCTATATAAgtaagctcctttctctctttttaccataagaccatgttttgtgtttatttaaagtatagccacaattttctagttgacatatatatgggtttccaaattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G20220.1 (Glycine max), 5'ss of exon 8
CTGAGGTCCAGTCGAAATTTCTGCATTGATATTATTTTGTTGTGTATAATTCTGGGAATTGCTGCCTATCTATATAAgtaag-ctcctttctctctttttaccataagaccatgttttgtgtttatttaaagtatagccacaattttctagttgacatatatatgggtttccaaattt
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CTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAAgtaaggctcctatctcttttcatga-acttgaaaacactcagcatttctcttctgctcatgaatttcaatctatgtattctatatatttctgctcaacttg
upper sequence: Vv08s0040g02130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G05870.1 (Glycine max), 5'ss of exon 9
CTGAGGTCCAGTCGAAATTTCTGCATTGATATTATTTTGTTGTGTATAATTCTGGGAATTGCTGCCTATCTATATAAgtaag-ctcctttctctcttt-ttaccataagaccatgttttgtgtttatttaaagtatagccacaattttctagttgacatatatatgggtttccaaattt-
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CTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAAgtaaggctcctatcacttttcatgaacttgaaaactcagcac-tgctcttctgctcttgaatttcaatctgaaagtattctt-tata-gtcctgctcaatttg
upper sequence: Vv08s0040g02130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G33680.1 (Glycine max), 5'ss of exon 8
CTGAGGTCCAGTCGAAATTTCTGCATTGATATTATTTTGTTGTGTATAATTCTGGGAATTGCTGCCTATCTATATAAgtaagctcctt-tctctctttttaccataagaccatgt-----tttgtgtttatttaaagtatagccacaattttctagttgacatatatatgggtttccaaattt
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CTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAAgtaaggttcttatctcttttctacagattaaaatatatgctagttccttctcttttcttgtgtggatttatatctc-agtt--catattctaggactgccttg---
upper sequence: Vv08s0040g02130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G36410.1 (Glycine max), 5'ss of exon 8
CTGAGGTCCAGTCGAAATTTCTGCATTGATATTATTTTGTTGTGTATAATTCTGGGAATTGCTGCCTATCTATATAAgtaag-ctcctttctctctttttaccataagaccatgtttt-gtgtttatttaaagtatagccacaattttctagttgacatatatatgggtttccaaattt
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CTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAAgtaaggttcctatctcttttctacagataaaaatatatgctagtctctactcccttctcttgtgtggatttatagctca-gttcatattctagtactgcct-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110724614|gb|EE100606.1|EE100606EST: GATATTATTTTGTTGTGTATAATTCTGGGAATTGCTGCCTATCTATATAA TGTATTGAAGAAGTGAACTGATGGCAA-GGCCTACTT
genomic: GATATTATTTTGTTGTGTATAATTCTGGGAATTGCTGCCTATCTATATAAgtaagctcct ... ccaattgcagTGTATTGAAGAAGTGAACTGATG-CAAAGGCCTACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGAGGTCCAGTCGAAATTTCTGCATTGATATTATTTTGTTGTGTATAATTCTGGGAATTGCTGCCTATCTATATAAgtaagctcctttctctctttttaccataagaccatgttttgtgtttatttaaagtatagccacaattttctagttgacatatatatgggtttccaaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctctc