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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccacaaaatacttttctctccttttttattttgtaggagggtgctacttggctgtagtcatggaaaggaaaatgaccccaaaaggggccgtagtcaagtaatgaacttcatatttttttatttctttatgttacag

Basic information

species Vitis vinifera
transcript Vv08s0040g01040.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033160|gb|FQ461932.1|FQ461932
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|37188456|gb|CF607805.1|CF607805
EST:     TAGACCCAGTGGAGGTATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|349827848|gb|FQ422716.1|FQ422716
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|77583953|gb|DV221017.1|DV221017
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|351043304|gb|FQ444025.1|FQ444025
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|351056246|gb|FQ453708.1|FQ453708
EST:     TAGACCCAGTGGAGACATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|351055541|gb|FQ442337.1|FQ442337
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|110709191|gb|EE084434.1|EE084434
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|37189567|gb|CF608916.1|CF608916
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|110707772|gb|EE084549.1|EE084549
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|351053966|gb|FQ441732.1|FQ441732
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|77583880|gb|DV220977.1|DV220977
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|71875979|gb|DT025034.1|DT025034
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|110707915|gb|EE084860.1|EE084860
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|349815813|gb|FQ400978.1|FQ400978
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|352789896|gb|FQ478711.1|FQ478711
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|351040753|gb|FQ438297.1|FQ438297
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|71873082|gb|DT022137.1|DT022137
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|349826160|gb|FQ415965.1|FQ415965
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|351041354|gb|FQ447481.1|FQ447481
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|351040299|gb|FQ425385.1|FQ425385
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|77577309|gb|DV217367.1|DV217367
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|351016501|gb|FQ423928.1|FQ423928
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|349828939|gb|FQ419272.1|FQ419272
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|349824039|gb|FQ417426.1|FQ417426
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|351023398|gb|FQ432781.1|FQ432781
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|77580683|gb|DV219246.1|DV219246
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|71876799|gb|DT025854.1|DT025854
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
EST: gi|351022732|gb|FQ428641.1|FQ428641
EST:     TAGACCCAGTGGAGATATCCTACTCACCAATAAATGCAGTTGGAACAGAG                         AAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT
genomic: TAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccaca ... tatgttacagAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGgcacgccacaaaatacttttctctccttttttattttgtaggagggtgctacttggctgtagtcatggaaaggaaaatgaccccaaaaggggccgtagtcaagtaatgaacttcatatttttttatttctttatgttacag

- - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT