Sequence
atgc intronic sequence ATGC exonic sequenceAGCGACTGGCTTTGTCATATAAAGGTGGGGATGAATTATACAAGGGTCTCATTGCCATATATGATGTTAGAAGGAATCCTCTGATTTCTGCATCATTAATgtgagtattattatgtcagcagctgtcttccccctatttttcaaatggtgtgcctttttggtttctttcatatcttgaatgagagcattttagtattagcttaaagatgatatctaatctatagtttgctatcatatgaatccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g00290.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G27520.1 (Glycine max), 5'ss of exon 12
AGCGACTGGCTTTGTCATATAAAGGTGGGGATGAATTATACAAGGGTCTCATTGCCATATATGATGTTAGAAGGAATCCTCTGATTTCTGCATCATTAATgtgagt--attatt----atg--tcagcagctg-tcttccccctatttt---tcaaatggtgtgcctttttg----gtttctttcatatcttgaatgagagcattttagtattagcttaaagatgatatctaatctatagtttgctatcatatgaatccag------------------
| ||| |||| |||| | ||||||||| || || |||||| |||||| || ||| |||||||| ||||||| |||||| || ||| |||||||||||||||| || || ||| || ||| ||| | |||||| || | | || || ||| || | | || || |||||| || |||| ||| | || | || ||| || | | | |||| | |
AACGATTGGCCGTGTCTTTTAAAGGTGGAGAGGATATATACAGGGGTCTGATCGCCGTATATGATACAAGAAGGACTCCTCTTATATCTACATCATTAATgtgagttcatggttgaaaatggtccaattactggtctctctgttattttgtcccatttttctttgattgttatgatgttggattttttttttaaaattaagcattctattattttgccaaatactattttgaagatattaattatt-tgacatgatttcccaccaattatatgttttag
upper sequence: Vv08s0040g00290.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G30500.1 (Glycine max), 5'ss of exon 12
AGCGACTGGCTTTGTCATATAAAGGTGGGGATGAATTATACAAGGGTCTCATTGCCATATATGATGTTAGAAGGAATCCTCTGATTTCTGCATCATTAATgtgagtattattatgtcagcagctgtcttcccccta-tttttcaaatggtgtgcctttttggtttctttcatatcttgaatgagagcattttagtattagcttaaagatgatatctaatctatagtttgctatcatatgaatccag
||||| ||||| |||| | ||||||||| ||||| | || | |||||| || |||||||||||| ||||| | |||||| || ||| |||||||||||||||| | || || | | ||| || | | | || | || | || | ||||| || || |||| | |||| | ||| | ||| |||| | | | | || ||||| | ||
AGCGATTGGCTGTGTCTTTTAAAGGTGGAGATGATATGTATAGGGGTCTGATCGCCATATATGATACAAGAAGAACTCCTCTTATATCTACATCATTAATgtgagt-tcatg--gttgaaaacggtccagttactggtctctgttattttatgtccagtt--tctctttgattgttttaatgttggatttttttttttaatt-----atgcattctattattttgccaa--attatatgt-tttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110707577|gb|EE084138.1|EE084138EST: ATTGCCATATATGATGTTAGAAGGAATCCTCTGATTTCTGCATCATTAAT TGGGTTTATTAGGGGGCCTGGCGAAAATCCGATACCTTTAGCATTTTCATT
genomic: ATTGCCATATATGATGTTAGAAGGAATCCTCTGATTTCTGCATCATTAATgtgagtatta ... atgaatccagTGGGTTTATTAGGGGGCCTGGCGAAAATCCGAAACCTTTAGCATTTTCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCGACTGGCTTTGTCATATAAAGGTGGGGATGAATTATACAAGGGTCTCATTGCCATATATGATGTTAGAAGGAATCCTCTGATTTCTGCATCATTAATgtgagtattattatgtcagcagctgtcttccccctatttttcaaatggtgtgcctttttggtttctttcatatcttgaatgagagcattttagtattagcttaaagatgatatctaatctatagtttgctatcatatgaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA