Sequence
atgc intronic sequence ATGC exonic sequenceCATGGAAACTCTTGTAACTGTGGTTTTGGATTCATCTGGTCAGCTTGTATCACTTTACAAGCCAGGCGGGCCAGTTCTTGCCTATGCATCAGCTGTGCAGgtcagtgaatatttgatcttttgattgtatctaaaccactagaacaactgtgtagttaagggggtggctcaaatataccaatgtactaaatgctatacaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g08550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G27080.1 (Glycine max), 5'ss of exon 8
CATGGAAACTCTTGTAACTGTGGTTTTGGATTCATCTGGTCAGCTTGTATCACTTTACAAGCCAGGCGGGCCAGTTCTTGCCTATGCATCAGCTGTGCAGgtcagtgaatatttgatcttttgattgt--atctaaaccactagaacaactgtgtagttaagggggtggctcaaatataccaatgtactaaatgctatacaa
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TATGGAAACCCATGTAACAGTAGTTTTGGATACATCCGGTCAACTAATATCTCTTTACAAGCCTGGTGGGCCAGTTCTTGCCTACACTTCTGCTATCCAGgttagtttgcacattgcaatggaactaacgaggtgaacca-tatgacagttatagattaacattaatgcatcagtgagcaatttttgaaaattactgtaaa-
upper sequence: Vv08s0007g08550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G50270.1 (Glycine max), 5'ss of exon 7
CATGGAAACTCTTGTAACTGTGGTTTTGGATTCATCTGGTCAGCTTGTATCACTTTACAAGCCAGGCGGGCCAGTTCTTGCCTATGCATCAGCTGTGCAGgtcagtgaatatttgatcttttgattgtatctaaaccactagaacaactgtgtagttaagggggtggctcaaatataccaatgtactaaatgctatacaa--
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TATGGAAACCCATGTGACAGTAGTTTTGGATACATCTGGTCAACTAATATCTCTTTACAAGCCTGGTGGGCCGGTTCTTGCCTACACTTCTGCTATCCAGgttagtttgcacatt-tcaatggaatggaactaactaggtgcaacaatatgacagttatagcattaacattgatgcattagtgagc-aatttttaaaaaaaa
upper sequence: Vv08s0007g08550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G22250.2 (Glycine max), 5'ss of exon 8
CATGGAAACTCTTGTAACTGTGGTTTTGGATTCATCTGGTCAGCTTGTATCACTTTACAAGCCAGGCGGGCCAGTTCTTGCCTATGCATCAGCTGTGCAGgtcagt--gaatatt-tgatcttttgattgtatctaaaccactagaacaactgtgtagttaagggggtggctcaaatataccaatgtactaaatgctatacaa--
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TATGGAAACCCATGTGACAATAGTTTTGGATACATCCGGTCAACTAATATCTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAGgttagtttgaacattgcaatcgaactaaca-aggtgaacca-tatcactgttatagcattaagtcattaacataa-tgcattagtgaac--aattttgaaaaaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46910484|gb|CN545859.1|CN545859EST: CACTTTACAAGCCAGGCGGGCCAGTTCTTGCCTATGCATCAGCTGTGCAG GACTGCATTGCACTAACAAGGCAAAGAGTGAAGGAGCTTAAGAGTATTCTG
genomic: CACTTTACAAGCCAGGCGGGCCAGTTCTTGCCTATGCATCAGCTGTGCAGgtcagtgaat ... atgactgcagGACTGCATTGCACTAACAAGGCAAAGAGTGAAGGAGCTTAAGAGTATTCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGGAAACTCTTGTAACTGTGGTTTTGGATTCATCTGGTCAGCTTGTATCACTTTACAAGCCAGGCGGGCCAGTTCTTGCCTATGCATCAGCTGTGCAGgtcagtgaatatttgatcttttgattgtatctaaaccactagaacaactgtgtagttaagggggtggctcaaatataccaatgtactaaatgctatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggtg