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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCTGGAGACATCAAGAAAGGGATATCTTGCAGCTATTTCTGCATCAAGTTATTCCTTTGTTTCTTTGCTCAAGCATTTCCTCCCAATAATGAATCCAGgtatatttcctattccctttttgttttgtcttttcaagtttttcttgctttcaatttatctttattcttcctcttttgtttttcccctcaaatcttcacaatgtgccatgaatcaatgttattggcagaatttaagcttcggtcttgattttacag

Basic information

species Vitis vinifera
transcript Vv08s0007g06390.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g06390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os08g23810.2 (Oryza sativa), 5'ss of exon 8
CTCCTGGAGACATCAAGAAAGGGATATCTTGCAGCTATTTCTGCATCAAGTTATTCCTTTGTTTCTTTGCTCAAGCATTTCCTCCCAATAATGAATCCAGgta-tatttcctattccctttttgttttgtcttttcaagtttttcttgctttca-atttatctttattcttcctcttttgtt-tttcccctcaaatcttcacaatgtgccatgaatcaatgttattggcagaatttaagcttcggtcttgattttacag
||  |||||||||||||||  || |||||||| ||  | || ||||| ||||| ||||| || ||||||||  |||| ||||| || |||||||||||||||| |  || ||   |  || |   | |            ||     ||| ||  ||  |    ||             |||  | ||  ||| |||||                                                            
CTATTGGAGACATCAAGAAGAGGGTATCTTGCTGCACTGTCAGCATCGAGTTACTCCTTCGTCTCTTTGCTTCAGCACTTCCTTCCTATAATGAATCCAGgtagtgcttactccgcagttctaactctccacgcctgcacttgaaccgctatcttatacactcctagataaatcaagccgttactgcctttcatatcttt-----------------------------------------------------------

upper sequence: Vv08s0007g06390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os09g10600.1 (Oryza sativa), 5'ss of exon 8
CTCCTGGAGACATCAAGAAAGGGATATCTTGCAGCTATTTCTGCATCAAGTTATTCCTTTGTTTCTTTGCTCAAGCATTTCCTCCCAATAATGAATCCAGgtatatttcctattccctttttgttttgtcttttcaagtttttcttgctttcaatttatctttattcttcctcttttgtttttcccctcaaatcttcacaatgtgccatgaatcaatgttattggcagaatttaagcttcggtcttgattttacag
 | ||||||||||||||||| || |||||||| ||  |||| ||||| ||||| || ||  | ||||| ||| | || ||||| || |||||||||||||||||       |  |  | |||| |  ||  | |  |  | || ||  ||||  ||| | || |    |    ||||     ||     |    ||| |||| |    ||                                              
TTGCTGGAGACATCAAGAAAAGGGTATCTTGCTGCAGTTTCAGCATCTAGTTACTCTTTCATCTCTTTACTCCAACACTTCCTTCCTATAATGAATCCAGgtat------caaacaatctttgcta-gtgctctgtaactattattattttctctttctgttcaggtgtggatttttaaaaatcatgcta--ctttctcaatttatt-tg----------------------------------------------

upper sequence: Vv08s0007g06390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G125052_T01 (Zea mays), 5'ss of exon 6
CTCCTGGAGACATCAAGAAAGGGATATCTTGCAGCTATTTCTGCATCAAGTTATTCCTTTGTTTCTTTGCTCAAGCATTTCCTCCCAATAATGAATCCAGgtatatttcctattccctttttgttttgtcttttcaagtttttcttgctttcaatttatctttattcttcctcttttgtttttcccctcaaatcttcacaatgtgccatgaatcaatgttattggcagaatttaagcttcggtcttgattttacag
 |  |||||||||||||||  || |||||||| || ||||| ||||| ||||| |||| |||||| |||||  |||||||||| || |||||||| || ||||      |     |     |   | |    |    | |     |||   |       |   ||| | |     |  |  |||     | || || || || |   ||| |                                            
TTGTTGGAGACATCAAGAAGAGGCTATCTTGCGGCAATTTCAGCATCGAGTTACTCCTATGTTTCATTGCTTCAGCATTTCCTTCCTATAATGAACCCCGgtag----tcaggggcgaagctaggtagatgctagggggtgcatatgcacccg------cgaaattttacaaaactactgattcagactagatttttaccatat---atgcac-------------------------------------------

upper sequence: Vv08s0007g06390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 8
CTCCTGGAGACATCAAGAAAGGGATATCTTGCAGCTATTTCTGCATCAAGTTATTCCTTTGTTTCTTTGCTCAAGCATTTCCTCCCAATAATGAATCCAGgta-----tatttcctattccctttttgttttgtcttttcaagtttttcttgctttcaatttatctttattcttcctcttttgtttttcccctcaaatcttcacaatgtgccatgaatcaatgttattggcagaatttaagcttcggtcttgattttacag
 |  |||| || |||||||  || |||||||| || ||||||||||| ||||| |||| |||||| |||||  |||| ||||| || ||||||||||| ||||     ||| |||||| |  |  |  | | |  | | | | | ||||      | |  |||    |  | || ||   || ||||| | || ||  |                                                              
TTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcatatctcctatgctatcatgctgtggcttctaccattatttcccatgctaagattaatactgctgttgctgcctttttttttctcttaaccca-------------------------------------------------------------

upper sequence: Vv08s0007g06390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G079256_T02 (Zea mays), 5'ss of exon 8
CTCCTGGAGACATCAAGAAAGGGATATCTTGCAGCTATTTCTGCATCAAGTTATTCCTTTGTTTCTTTGCTCAAGCATTTCCTCCCAATAATGAATCCAGgta-tatttcctattccctttttgttttg-tcttttcaagtttttct-tgctttcaatttatctttattcttcctcttttgtttttcccctcaaatcttcacaatgtgccatgaatcaatgttattggcagaatttaagcttcggtcttgattttacag
|| || ||||||||||| |  ||||| ||||| || ||||| ||||| |||||||| | ||||||||| ||  | || ||||| || |||||||||||||||| |||| | || |    |  ||| | | | || ||   | || || |   || |       ||   |  |||  ||||   |   | ||   || ||                                                            
CTGCTTGAGACATCAAGGAGAGGATACCTTGCTGCAATTTCAGCATCTAGTTATTCTTATGTTTCTTTACTTCAACACTTCCTTCCCATAATGAATCCAGgtaatattgcatactgatatgctgtgtcgatattctcttctgttcctatatgttgacgccgatttgggtgatcccttttttagtcaacactatgattttg-----------------------------------------------------------

upper sequence: Vv08s0007g06390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G05990.2 (Arabidopsis thaliana), 5'ss of exon 7
CTCCTGGAGACATCAAGAAAGGGATATCTTGCAGCTATTTCTGCATCAAGTTATTCCTTTGTTTCTTTGCTCAAGCATTTCCTCCCAATAATGAATCCAGgtatatttcctattcccttt--ttgttttgtcttttcaagtttttcttgctttcaatttatctttattcttcctcttttgtttttcccctcaaatcttcacaatgtgccatgaatcaatgttattggcagaatttaagcttcggtcttgattttacag
|| |||||||||||||| || || ||||| || ||||| ||||| || ||||| ||||||||||| ||||| | |||||| || ||||| ||||| ||||| || |  |  ||| | | |   | |||  || ||  || | | | ||  | |    || ||| |  |  |                                                                                       
CTTCTGGAGACATCAAGGAAAGGCTATCTCGCTGCTATCTCTGCTTCGAGTTACTCCTTTGTTTCCTTGCTGAGGCATTTTCTGCCAATTATGAACCCAGgcatgtaacaaatttcgtatgtctctttattccttgtaaatatgttttcttatttggttctctatgatgatttag-----------------------------------------------------------------------------------