Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATAGCCAAAGGAGAAAATGGTGTATATGCAAAGCTCATCAGAATGCAGGAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAGgtagcctccactaaattcttatctctttcatatggatattttctattattcccacatactggtgtcatggcatgctctactttaacactgctcttcatctgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g05060.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G06220.1 (Glycine max), 5'ss of exon 9
TCATAGCCAAAGGAGAAAATGGTGTATATGCAAAGCTCATCAGAATGCAGGAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAGgtagcctccactaaattcttatctctttcatatggatattttctattattcccacatactggtgtcatggcatgctctactttaacactgctcttcatctgcag
|| | || |||||||||||||| || ||||| ||||| ||| | ||||||||||  || ||||||||  || ||| ||| || |||||||||||||||||||||| | ||| ||         | ||  | || |  ||| | |   || | || ||| |           ||| | ||   | |   || | ||||| | |||
TCTTTGCTAAAGGAGAAAATGGAGTCTATGCTAAGCTTATCCGGATGCAGGAGATGGCACATGAAACTTCTATGAATAATGCAAGAAAGAGTAGTGCAAGgtagctttcaccaa---------tattgaacattggcattcttttaaatactcatatatta---------tatgttttaagatgaggatg-tgttcatttacag

upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G20530.1 (Glycine max), 5'ss of exon 8
TCATAGCCAAAGGAGAAAATGGTGTATATGCAAAGCTCATCAGAATGCAGGAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAGgtagcctccactaaattcttatctctttcatatggatattttctattattcccacatactggtgtcatggcatgctctactttaacactgctcttcatctgcag
|| | |||||||| |||||||| || ||||| ||||| ||| | ||||||||||  || ||||||||  || ||| ||| ||||||||||||||||||||||    | ||| ||         | ||  | || |  ||| | |   || | || ||| |           ||| | ||   | |    | | ||||| |||||
TCTTTGCCAAAGGTGAAAATGGAGTCTATGCCAAGCTTATCCGGATGCAGGAGATGGCACATGAAACTTCTATGAATAATGCCAGAAAGAGTAGTGCAAGgt----ttcaccaa---------tattgaacattggcattcttttaaatactcatatatta---------tatgttttaagatgaggtcg-tgttcatttgcag

upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G36820.1 (Glycine max), 5'ss of exon 8
TCATAGCCAAAGGAGAAAATGGTGTATATGCAAAGCTCATCAGAATGCAGGAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAGgtagcctccactaaattcttatctc----tttcatatggatattttctattattcccacatactggtgtcatggcatgctctactttaacactgctcttcatctgcag----------------------------------
|| |  | ||||| |||||||| || ||||| ||||| || |  ||||||||||  || |||||||| ||  ||| ||| ||||||||||||||||||||||||| | ||||||  | | |  |     ||   |    | | | | |    ||       | || | |       |  |  |   |    || ||    ||    ||                                  
TCTTCTCGAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCATGAATAATGCCAGAAAGAGTAGTGCAAGgtagctttcactaatatttaacattggcattctttgaaaaaactgtttgaagttaattttcattgttttttaaagtttattaatcctttggctactgaatattccaagctgatatgtcatctcatgacattttcatttgcag

upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G34080.1 (Glycine max), 5'ss of exon 8
TCATAGCCAAAGGAGAAAATGGTGTATATGCAAAGCTCATCAGAATGCAGGAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAGgtagcctccactaa-attc----ttatctctttcatatggatattttctattattcccacatactggtgtcatggcatgctctactttaacactgctcttcatctgcag-----------------------------------------------------
|| |  | ||||| |||||||| || ||||| ||||| || |  ||||||||||  || |||||||| ||  ||| ||| || |||||||||||||||||||||| |||||||| ||||    ||  |  | |   |   |   | | | |  ||     | | || |         |  |  |  ||    |  ||    ||    ||                                                     
TCTTCTCGAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCGTGAATAATGCTAGAAAGAGTAGTGCAAGgtagcttccactaatattcgacattggcattctttgaaaaaagctgtttgtagttaatttacattgtttatgaaaatttattcatcttttggccactgaatattccaagctgagatatatcatatatccatatatcatctcacgtgacatttttatttgcag

upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G36910.1 (Arabidopsis thaliana), 5'ss of exon 8
TCATAGCCAAAGGAGAAAATGGTGTATATGCAAAGCTCATCAGAATGCAGGAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAGgtagcctcc-actaaattcttatctctttcatatggatattttctattattcccacatactggtgtcatggcatgctctactttaacactgctcttcatctgcag
|  |  |||| ||||||||||| || ||||| ||||| || | |||||| ||  |||| || ||||||||  |||| || || ||||||||||| ||||||||  |||  | | | ||  | | | |||  | |    ||  |   || ||      ||||| ||| |    ||    | |                        
TTTTTTCCAAGGGAGAAAATGGAGTCTATGCTAAGCTAATTAAAATGCAAGAAGCAGCTCACGAAACCGCCATGAGCAATGCAAGAAAGAGTAGCGCAAGgtatactcttattcattttgtgtttgttttttgttttgatgatgcttttttttgggttactgatgttaatctatttgttgcag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699988|gb|EE077512.1|EE077512
EST:     GAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAG                         GCCTTCTAGTGCTAGAAATTCAGTAAGCTCACCAATAATTGCCAGGAACTC
genomic: GAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAGgtagcctcca ... tcatctgcagGCCTTCTAGTGCTAGAAATTCAGTAAGCTCACCAATAATTGCCAGGAACTC
EST: gi|30253246|gb|CB970797.1|CB970797
EST:     GAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAG                         GCCTTCTAGTGCTAGAAATTCAGTAAGCTCACCAATAATTGCCAGGAACTC
genomic: GAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAGgtagcctcca ... tcatctgcagGCCTTCTAGTGCTAGAAATTCAGTAAGCTCACCAATAATTGCCAGGAACTC
EST: gi|161708259|gb|FC055259.1|FC055259
EST:     GAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAG                         GCCTTCTAGTGCTAGAAATTCAGTAAGCTCACCAATAATTGCCAGGAACTC
genomic: GAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAGgtagcctcca ... tcatctgcagGCCTTCTAGTGCTAGAAATTCAGTAAGCTCACCAATAATTGCCAGGAACTC