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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATACAAATGTTGGACGTATAGCTGTAAGATTGGGATGGGTACCCCTTCAGCCCTTGCCTGAGTCACTTCAATTGCATCTTCTAGAACTgtgagtataaattagcaatgcagaacatgtgcattcacaacagaagtattaataccattcctacacag

Basic information

species Vitis vinifera
transcript Vv08s0007g03920.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g03920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G34860.2 (Glycine max), 5'ss of exon 11
GTTGATACAAATGTTGGACGTATAGCTGTAAGATTGGGATGGGTACCCCTTCAGCCCTTGCCTGAGTCACTTCAATTGCATCTTCTAGAACTgtgagtat-----aaattagcaatgcagaaca---tgtgcattcacaacagaagtattaa--taccattcctacacag-----
|| || |||||||||||||||||||| ||||||||||||||||| || || |||||  |||| |||||||| || ||||||||||||||| ||||||||      |||| |    |  |   ||   | | || | | || | |||   |||  || |||   |  || |     
GTGGACACAAATGTTGGACGTATAGCAGTAAGATTGGGATGGGTGCCTCTCCAGCCACTGCCAGAGTCACTACAGTTGCATCTTCTAGAATTgtgagtacttcaaaaataaatggtataaggcaagttattcaattagaaaataagagctaacctaacatcattggactgtgtag

upper sequence: Vv08s0007g03920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G21460.1 (Glycine max), 5'ss of exon 14
GTTGATACAAATGTTGGACGTATAGCTGTAAGATTGGGATGGGTACCCCTTCAGCCCTTGCCTGAGTCACTTCAATTGCATCTTCTAGAACTgtgagtataaattagcaatgcagaacatgtgcattcacaaca-gaagtattaataccatt--cctacacag
|| || |||||||| ||||||||||| ||| || |||||||||| || || |||||  ||||||||||||| || |||||||| |||||| |||||||| | |  |   ||      |||  |   |    | | |||| | ||||| ||||  | ||  |||
GTAGACACAAATGTCGGACGTATAGCAGTACGACTGGGATGGGTCCCTCTACAGCCACTGCCTGAGTCACTGCAGTTGCATCTCCTAGAATTgtgagtacata--aatgatatgaggcattagttctgttgatatgaagaactaatatcattgtcttatgcag