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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTTTCAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaagatattattttctgcctttggtatcttcatcatgtcatctaacttttcccactctttgatccatgtgtgcccttttctatgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g01980.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110691663|gb|EE070021.1|EE070021
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|161713904|gb|FC062870.1|FC062870
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAGACAAATGATATGATGTTGGTTA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTA
EST: gi|32245274|gb|CD711093.1|CD711093
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|33406522|gb|CF212149.1|CF212149
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|110409702|gb|EC975372.1|EC975372
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|110380658|gb|EC945941.1|EC945941
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|110697690|gb|EE074900.1|EE074900
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAA-TGGATATGAATGTGGGTTATT-ATCTTTCATCTCTCATCCG
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATG-ATATGA-TGTTGGTTATTTATCTTTCATCTCTCATCCG
EST: gi|33406800|gb|CF212427.1|CF212427
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|26263205|gb|CA814268.1|CA814268
EST:     CAACTTGCT-CCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTCTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|110418075|gb|EC984190.1|EC984190
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|33409710|gb|CF215337.1|CF215337
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|32458047|gb|CD799221.1|CD799221
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|30296907|gb|CB973701.1|CB973701
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|110409249|gb|EC974909.1|EC974909
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|30321841|gb|CD005103.1|CD005103
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|22008941|gb|BQ793975.1|BQ793975
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|110387831|gb|EC952529.1|EC952529
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|110380016|gb|EC945251.1|EC945251
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|45771085|gb|CN006937.1|CN006937
EST:     CAACTTG-TTCCAAATCTCAATGTTGC-GAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|29783657|gb|CB349975.2|CB349975
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|110732758|gb|EE108326.1|EE108326
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|30124736|gb|CB910075.1|CB910075
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|110396200|gb|EC961881.1|EC961881
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
EST: gi|33407874|gb|CF213501.1|CF213501
EST:     CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAG                         TGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA
genomic: CAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGgtgaggccaa ... ttctatgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAA