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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAGgtgggtcccttttctcatcccctctaactttcattgccttgggattctactttacatgctatgtaccttttttttttttcttttttttttttctaaacag

Basic information

species Vitis vinifera
transcript Vv08s0007g01940.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G100652_T03 (Zea mays), 5'ss of exon 6
CTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAGgtgggtcccttttctcatcccctctaactttcattgccttgggattctactttacatgctatgtaccttttttttttttcttttttttttttctaaacag
| || | ||| || |||||||| ||||| |||||||| ||||| ||||||||||||| |         |||||||||| ||| |||| ||   | | | |||   | |||| |    |     |  |||   || | | || ||      |  ||    | |  |  ||  | ||||  |   | |||
CCAATAAAATACGCCTTTGGAACAAGGGTGTTGACTCAGAAAGCTTCCATCCTCGTTTCCGCAACATGGAAATGCGTTCAAGGCTAACgtacatgcatattcctcttcccttt----tgtgcagttttgtatttgtccgtttcaatgcccgggccgaactgtggtg-ctaatgttttcgttggagcag

upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G27840.1 (Glycine max), 5'ss of exon 8
CTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAGgtgggtcccttttctcatcccctctaactttcat-tgccttgggattctactttacatgctatgtaccttttttttttttcttttttttttttctaaacag
| ||||  ||| |||||||||| ||||| ||||| ||||||||||||||||| || | | | || || |||||||| |||||||| |||||    || |||  |||          |||||| ||||    |||     || |   | | |  || | || ||  | |  | |  | |           
CGAACAAGATTTGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagaccattttccat----------tttcatgtgcccaatgat---gtttaatgggttttcaacttattcttaatcttgtgtcatatag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110423954|gb|EC990307.1|EC990307
EST:     GAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAG                         CAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGT
genomic: GAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAGgtgggtccct ... ttctaaacagCAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGT