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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAGgtacagtttcaaattgtgtgatactcttatgccccttttaattgttctggtcttgctttgcacatggtggtgcatggctttcaacttcatttccagatgt...

Basic information

species Vitis vinifera
transcript Vv08s0007g01700.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G14780.1 (Glycine max), 5'ss of exon 8
GGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAGgtacagtttcaaattgtgtgatactcttatgccccttttaattgttctggtcttgctttgcacatggtggtgcatggctttcaactt-catttccagatgt-
|| ||  | ||||| || || || ||  | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||| | |||  |||  | || |||  ||      | |||  ||  | ||||  | || | ||     |  |  ||   | |    || |||       ||  
GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtata-ttttgaatactctgctacatttccatttcctttcttttctgtggtaatcctgt-catgaattaatttatttttattgctttgcatgcttgtttggg

upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G27120.1 (Glycine max), 5'ss of exon 7
GGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAGgtacagtttcaaattgtgtgatactcttatgccccttttaattgttctggtcttgctttgcacatggtggtgcatggctttcaacttcatttccagatgt---
|| ||  | ||||| || || || ||  | ||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||   ||  |   |  |  | | | | ||   |||||   || |   |   ||  | | ||   |      |||   |   |   | | |  ||   |    
GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgta---ttgaatgctccgctacattttgattttcctttcttttctgtggtaatttatctccaatagaacccacattattaaaataatgagtcacattggataa

upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G42220.1 (Glycine max), 5'ss of exon 7
-GGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAGgtacagtttcaa-attgtgtgatactcttatgccccttttaattgttctggtcttgctttgcacatggtggtgca-tggctttcaacttcatttccagatgt
 || ||| ||||||| || ||||| || |||||||||||||||||||| ||||||||||| || ||||||||||| ||  | |||||||||||  || || | | |||||||   ||   ||  ||||  ||    |  | |  | |  | |||||   |  | |   |||  |   |||       || 
GGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACTCTAGAACAggtacaagttgaatactttgtgatagcttt---ccatttttcctttccttcttatcacctatctcatggaattctagtttatttttatagcatacttgtctgc

upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G17380.1 (Glycine max), 5'ss of exon 7
GGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAGgtacagtttcaa-attgtgtgatactcttatgccccttttaattgttctggtcttgctttgcacatggtggtgcatggctttcaacttcatttccagatgt-
|| ||| ||||||| || | ||| || |||||||||||||||||||| ||||||||||| || ||||||||| | ||  | |||||||||||  || || | | |||||||   ||       |  ||  | || |  ||||     | |  |  ||| |     ||||      |||       ||  
GGACCTTTTGCCTTTTATATGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTTTAACTCTAGAACAGgtacaagttgaatactttgtgatagctttccatttttccta--tcttattatcttatcaagtatctcatggagttctactttatttaccatacttgtctgct

upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S54_186V6.1 (Physcomitrella patens), 5'ss of exon 7
GGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAGgt--acagtttcaaattgtgtgatactcttatgcc----ccttttaattgtt-ctggtcttgc--tttgcacatggtggtgcatggctt-----tcaacttcatttccagatgt-------
||  ||   || || |||||||| ||| | || ||||| || || || || |||||||||||||| |||||| ||||||||||||||||       ||       | |||  || |  || |     |||  ||  ||| ||| |  |    ||||  |||  |  |   ||         | ||||   | |   |||||       
GGTGCTGGAGCTTTTTACAAGGGATTTTTGCCCAATTTCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttactttgtggcatttgaatctttcctgtcggggtcttaaaaacgttactgatagtataatttgatcatttttctttgtgatcagtagattaactaagtgtttggatgtgttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407463|gb|CF213090.1|CF213090
EST:     TTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAG                         GCTAAGAAGTTCGTCCAACGCATAGAGTCGTCATGAGTTTTAAAGAGAGCT
genomic: TTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAGgtacagtttc ... cccatgacagGCTAAGAAGTTCGTCCAACGCATAGAGTCGTCATGAGTTTTAAAGAGAGCT