1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AACCCCTTTTGGTGAAGCTTGCTTGAGAATGGATCTCACTGCTATACATGAAATCTTGGACAAGATTGGATACAAGGATGATGAAGGGATTGCCAATGAGgtttgctactgcatgtcctaaatttgacattctcttttgtacagtttgaaggacttagctagtgcctaattcagtaagatgggaacgttactaatgcttg...
species | Vitis vinifera |
transcript | Vv08s0007g01520.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAATCTTGGACAAGATTGGATACAAGGATGATGAAGGGATTGCCAATGAG CTTTCATTTCAGATGTGGACCAATCAAATGCAGGAGACCTTGAATTCCAAGEST: gi|34363245|gb|CF404830.1|CF404830
genomic: AAATCTTGGACAAGATTGGATACAAGGATGATGAAGGGATTGCCAATGAGgtttgctact ... atctgtgcagCTTTCATTTCAGATGTGGACCAATCAAATGCAGGAGACCTTGAATTCCAAG
EST: GATGATGAAGGGATTGCCAATGAG CTTTCATTTCAGATGTGGACCAATCAAATGCAGGAGACCTTGAATTCCAAGEST: gi|33410051|gb|CF215678.1|CF215678
genomic: GATGATGAAGGGATTGCCAATGAGgtttgctact ... atctgtgcagCTTTCATTTCAGATGTGGACCAATCAAATGCAGGAGACCTTGAATTCCAAG
EST: AAATCTTGGACAAGATTGGATACAAGGATGATGAAGGGATTGCCAATGAG CTTTCATTTCAGATGTGGACCAATCAAATGCAGGAGACCTTGAATTCCAAGEST: gi|110364306|gb|EC923835.1|EC923835
genomic: AAATCTTGGACAAGATTGGATACAAGGATGATGAAGGGATTGCCAATGAGgtttgctact ... atctgtgcagCTTTCATTTCAGATGTGGACCAATCAAATGCAGGAGACCTTGAATTCCAAG
EST: AAATCTTGGACAAGATTGGATACAAGGATGATGAAGGGATTGCCAATGAG CTTTCATTTCAGATGTGGACCAATCAAATGCAGGAGACCTTGAATTCCAAG
genomic: AAATCTTGGACAAGATTGGATACAAGGATGATGAAGGGATTGCCAATGAGgtttgctact ... atctgtgcagCTTTCATTTCAGATGTGGACCAATCAAATGCAGGAGACCTTGAATTCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCCCTTTTGGTGAAGCTTGCTTGAGAATGGATCTCACTGCTATACATGAAATCTTGGACAAGATTGGATACAAGGATGATGAAGGGATTGCCAATGAGgtttgctactgcatgtcctaaatttgacattctcttttgtacagtttgaaggacttagctagtgcctaattcagtaagatgggaacgttactaatgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgggaa