Sequence
atgc intronic sequence ATGC exonic sequenceAGGTGTTCCACCTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCCTGGTTTTGAGCCTAATAGATTTACCAGgtatttttaaacaaattgattccttttcttttcctttgttttttcctttttgggtttgctaatgactgaactaaataactcaattgctatggaaaataat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01340.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G17840.2 (Glycine max), 5'ss of exon 8
AGGTGTTCCACCTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCCTGGTTTTGAGCCTAATAGATTTACCAGgtatttttaaacaaattgattccttttcttttcctttgttttttcctttttgggtttgcta-atgactgaactaaataactcaattgctatggaaaataat----
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GGGTGTTCCTCCCGGTGCACGATTTGATCCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttcaaggacatcatg--tgttccatacaagtatattgcactaatgacgtcatttacatgtttaacccttgta---catcttttatgtattgttctctcg
upper sequence: Vv08s0007g01340.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G06650.1 (Glycine max), 5'ss of exon 8
AGGTGTTCCACCTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCCTGGTTTTGAGCCTAATAGATTTACCAGgtatttttaaacaaattgattccttttcttttcctttgttttttcctttttgggtttgctaatgactgaactaaataactcaattgctatggaaaataat----
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GGGTGTTCCTCCCGGTGCGCGATTTGATCCATATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAGgtatggtgcaa--ggtcatcatgtattccatacaagtatattgcactaatgatgtcatttacatgtttaacccttgaacgtcttt--tatgtattgttgttctc
upper sequence: Vv08s0007g01340.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G53970.1 (Arabidopsis thaliana), 5'ss of exon 8
AGGTGTTCCACCT---GGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCCTGGTTTTGAGCCTAATAGATTTACCAGgtatt--tttaaacaaattgattccttttcttttcctttgttttttcctttttgggtttgctaatgactgaactaaataactcaattgctatggaaaataat
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GGGTATGCCACCTCCTGGTGCGCGTTTTGATCCTTATGGTCCACCCGGTGTTCCAGGTTTTGAGCCAGGCCGGTTCACAAGgtagtaatcttatgcactcagtagtctccttactacactccacaatcataatctgtttcgcaaatggttctgattctt--ctttatatcaatcgtgtgtag-
upper sequence: Vv08s0007g01340.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G53970.2 (Arabidopsis thaliana), 5'ss of exon 7
-------------------AGGTGTTCCAC---CTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCCTGGTTTTGAGCCTAATAGATTTACCAGgtatt--tttaaacaaattgattccttttcttttcctttgttttttcctttttgggtttgctaatgactgaactaaataactcaattgctatggaaaataat
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TTGTTTGTGGTTTTGACAGGGGTATGCCACCTCCTGGTGCGCGTTTTGATCCTTATGGTCCACCCGGTGTTCCAGGTTTTGAGCCAGGCCGGTTCACAAGgtagtaatcttatgcactcagtagtctccttactacactccacaatcataatctgtttcgcaaatggttctgattctt--ctttatatcaatcgtgtgtag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110372149|gb|EC936298.1|EC936298EST: CCTTATGGCCCACCTGGCGTTCCTGGTTTTGAGCCTAATAGATTTACCAG GATGCCTAGGAGACTTGGTGGGAGGA-CTCATCCAGACTTGCAACACTTTG
genomic: CCTTATGGCCCACCTGGCGTTCCTGGTTTTGAGCCTAATAGATTTACCAGgtatttttaa ... tgttttgcagGATGCCTAGGAGACCTGGTGG-AGGAACTCATCCAGACTTGCAACACTTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGTGTTCCACCTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCCTGGTTTTGAGCCTAATAGATTTACCAGgtatttttaaacaaattgattccttttcttttcctttgttttttcctttttgggtttgctaatgactgaactaaataactcaattgctatggaaaataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa