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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTATTCTTGGAAGGAAATCCTTATCTCCTGGTGGTTACAATGGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATGgcaagtgacaattattagtataattgcatgtttcaatttctcatttctgcattaactttgaggcttgtgtgatctttcatgatgaatgtagcttattaatctattttgctttcctcttcag

Basic information

species Vitis vinifera
transcript Vv07s0130g00170.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0130g00170.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G38120.1 (Glycine max), 5'ss of exon 8
AGGGTATTCTTGGAAGGAAATCCTTATCTCCTGGTGGTTACAATGGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATGgcaagtgacaattattagtataattgcatgtttcaatttctcatttctgcattaactttgaggcttgtgtgatctttcatgatgaatgtagcttattaatctatt-ttgctttcctcttcag
||||||||||||||||| |||||||| |||||||   |||| ||||| || ||   ||||||||| || ||||| |||||||| ||||||||||| ||||  ||||| |    | | |      ||| |    |||           ||     |      | ||   |||  | |    |  || |||| ||   ||| ||   || ||    ||
AGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTTCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATGgtaagt--caattgtcca-acagtc-----tttaagcacctc----------caagaagaaaatccatatgga-tttggttagaggtacaggttatcaactaattattttgtttcttcctag

upper sequence: Vv07s0130g00170.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G16940.1 (Glycine max), 5'ss of exon 8
AGGGTATTCTTGGAAGGAAATCCTTATCTCCTGGTGGTTACAATGGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATGgcaagtgacaattattagtataattgcatgtttcaatttctcatttctgcattaactttgaggcttgtgtgatctttcatgatgaatgtagcttattaatctatt-ttgctttcctcttcag
||||||||||||||||| |||||||| |||||||   |||| ||||| || ||   ||| ||||| || ||||| |||||||| ||||||||||| ||||  ||||| |           ||   || ||     ||  ||  || |||    ||      | ||   |||  | |    |  || | || |    ||| ||   |  ||   |||
AGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTCCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATGgtaagt--caattgtcca-------acagtctttaagaaagcacctc--caataag---gaaatgcatatgga-tttggttagaggtacaggtaatcatctaattattttctctcttcccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712610|gb|EE087807.1|EE087807
EST:     GGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATG                         ATATCCAATTTTGGAACAAAAACAAGTCTATGGAATGACTATCTGCAAAGT
genomic: GGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATGgcaagtgaca ... tcctcttcagATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGT
EST: gi|110701816|gb|EE079820.1|EE079820
EST:     GGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATG                         ATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGT
genomic: GGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATGgcaagtgaca ... tcctcttcagATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGT