Sequence
atgc intronic sequence ATGC exonic sequenceACTGAAGTTGGACCATGCAAGGGTGATTGACACTGCATTTATCTACAAATATGAGAACCAACCTATTAACAGAAGACCTTCTTTGAACAATCTGTGCAAGgcaagttccttaaattttttgataatagctagttcttgaaaacgtgagtgtgttattatttctgtgttttttcctataatatttatgttatttttacctg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0129g01120.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G67240.1 (Arabidopsis thaliana), 5'ss of exon 7
ACTGAAGTTGGACCATGCAAGGGTGATTGACACTGCATTTATCTACAAATATGAGAACCAACCTATTAACAGAAGACCTTCTTTGAACAATCTGTGCAAGgcaag--ttccttaaattttttgataatagctagttcttgaaaacgtgagtgtgttattatttctgtgttttttcctataatatttatgttatttttacctg-
||| | | || ||||| || || || || ||| ||| | | | | | || | ||| | | ||||||||||||||| ||||| ||||||||||| | | || ||| || | ||| ||| | || | | || | | | || | | || | | ||| | | ||| |
GTTGAGGATAGATCATGCGAGAGTAATAGATACTTCATATGTATTTGAGTTTGTCGATGCACCAAAGACTCAAAGACCTTCTTTGAATAATCTATGCAAGgcaagcatgctttgcttttattattctctgctcgttgtgaaattcagaatcctgaatatgtatatgattgataaatcattttgtgtatttcttgtttctccag
upper sequence: Vv07s0129g01120.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G67240.2 (Arabidopsis thaliana), 5'ss of exon 7
-ACTGAAGTTGGACCATGCAAGGGTGATTGACACTGCATTTATCTACAAATATGAGAACCAACCTATTAACAGAAGACCTTCTTTGAACAATCTGTGCAAGgcaag--ttccttaaattttttgataatagctagttcttgaaaacgtgagtgtgttattatttctgtgttttttcctataatatttatgttatttttacctg-
||| | | || ||||| || || || || ||| ||| | | | | | || | ||| | | ||||||||||||||| ||||| ||||||||||| | | || ||| || | ||| ||| | || | | || | | | || | | || | | ||| | | ||| |
TGTTGAGGATAGATCATGCGAGAGTAATAGATACTTCATATgtatttgagtttgtcgatgcaccaaagactcaaagaccttctttgaataatctatgcaaggcaagcatgctttgcttttattattctctgctcgttgtgaaattcagaatcctgaatatgtatatgattgataaatcattttgtgtatttcttgtttctccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30136777|gb|CB922115.1|CB922115EST: CTTTGAACAATCTGTGCAAG TCTATCTTGGGCTATGAAGTGCGTCAGAAGGATGCTCCG-ACAATTGTCTA
genomic: CTTTGAACAATCTGTGCAAGgcaagttcct ... gttttgacagTCTATCTTGGGCTATGAAGTGCGTCAGAAGGATGCTCCGCACAATTGTCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTGAAGTTGGACCATGCAAGGGTGATTGACACTGCATTTATCTACAAATATGAGAACCAACCTATTAACAGAAGACCTTCTTTGAACAATCTGTGCAAGgcaagttccttaaattttttgataatagctagttcttgaaaacgtgagtgtgttattatttctgtgttttttcctataatatttatgttatttttacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaacg