Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGCTTCATTGTGATATAACTCCCAGGGCATGTGAGAACTTCATCACTCTCTGTGAACGTGGCTATTATAATGGGATAGCTTTTCATAGAAACATTCGgtatggttacagctacttcatttcaatccaataagttcaatatttctttttgattaactatcatttctgatgttgaagagctctgagttatttctgatgttgagagatactgttctccactttgtgtag

Basic information

species Vitis vinifera
transcript Vv07s0129g00040.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G40170.1 (Glycine max), 5'ss of exon 8
TTGAGCTTCATTGTGATATAACTCCCAGGGCATGTGAGAACTTCATCACTCTCTGTGAACGTGGCTATTATAATGGGATAGCTTTTCATAGAAACATTCGgtatggttacagctacttcatttcaatccaataagttcaatatttcttt--ttgattaactatcatttctgatgttgaagagctctgagttatttctgatgttgagagatactgttctccactttgtgtag
||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||  | |||||||||||||||||| |||||  | ||| |  ||| || |   |||    |||  | ||   | |   || |||  ||   | | |  |||||    ||                                                 
TTGAGCTGCATTGTGATATAACCCCCAGGGCATGCGAGAACTTCATCACTCTTTGTGAACGTGGATATTATAATGGAGTTGCTTTTCATAGAAACATTAGgtataatgacatcctctttatctttctccctggagtaaattaagccatagatttattgtcttaaaatcc--atgttatgcag-------------------------------------------------

upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G05130.1 (Glycine max), 5'ss of exon 8
TTGAGCTTCATTGTGATATAACTCCCAGGGCATGTGAGAACTTCATCACTCTCTGTGAACGTGGCTATTATAATGGGATAGCTTTTCATAGAAACATTCGgtatggttacagctacttcatttcaatcc----aataagttcaatattt--ctttttgattaactatcatttctgatgttgaagagctctgagttatttctgatgttgagagatactgttctccactttgtgtag
||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |||||||||||  | |||||||||||||||||| |||||  | ||| |  || ||| |    ||    | ||| || ||  ||    || ||| || |  |||  || | |||  |                                                      
TTGAGCTGCATTGTGATATAGCACCCAGGGCATGTGAGAACTTCATCACTCTTTGTGAACGTGGATATTATAATGGAGTTGCTTTTCATAGAAACATTAGgtataatgacatcctctgcatctttccccctggagtaaattaaaccttagatttattgttttataatccatttt-atgcag------------------------------------------------------

upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G67530.1 (Arabidopsis thaliana), 5'ss of exon 8
TTGAGCTTCATTGTGATATAACTCCCAGGGCATGTGAGAACTTCATCACTCTCTGTGAACGTGGCTATTATAATGGGATAGCTTTTCATAGAAACATTCGgtatggttacagctacttcatttcaatccaataagttcaatatttctttttgattaactatcatttctgatgttgaagagctctgagttatttctgatgttgagagatactgttctccactttgtgtag
||||||| ||||| |||||| |||| || ||||||||||| ||||||||||||||||||||||| || || |||||  | || ||||| ||||  ||  ||||||  ||||  ||  || |   ||||   |  |||  |    | ||| ||     | || |    |||| ||         |||  | | |   |    |                           
TTGAGCTCCATTGCGATATAGCTCCTAGAGCATGTGAGAATTTCATCACTCTCTGTGAACGTGGTTACTACAATGGAGTGGCCTTTCACAGAAGTATCAGgtatgcatacatatatgtcttggaaatctgttttgttttaagagtttttatgg--ggcaattaaacatgatctt--------ttgacctttcttctacaaag---------------------------