Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTCTACTGATCGTGAAGTTGCACTTATGATTGTCATGGCTTACCTTTCATACATTATGGCTGAAgtaagatttctttctacccttcaagcacctttataagaatctcatcaagttctgtttgaaatatacaaggactatcatcatccaattctgtgctttataaggattattatcatccacttctgtgctttactgatagtgtttataaattctgttcatcatccag

Basic information

species Vitis vinifera
transcript Vv07s0104g01280.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g01280.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 8
GCACTCTACTGATCGTGAAGTTGCACTTATGATTGTCATGGCTTACCTTTCATACATTATGGCTGAAgtaagatttctttctacccttcaagcacctttataagaatctcatcaagttctgtttgaaatatacaaggactatcatcatccaattctgtgctttataaggattattatcatccacttctgtgctttactgatagtgtttataaattctgttcatcatccag
||| |||||||| ||||| ||||| ||||||||  ||||||||||||||||||| ||  ||||||| ||  |       ||| |  || | |||   | |  | | |  |||  ||||   |||    ||||    || | | |||  |   || | || || |||  |                                                             
GCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGgtgtg-----cctctgct-ttgatgcagtatca--aaatttgcatatagtttcattt----tatagtttgatt-ttatctact--ttgtttgtttgatattggcag---------------------------------------------------------