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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACCTGTAAATGGATCTGTGAGTGATCATCAAAGATTGGGACCTGCTGGTCTTGCATTGCATTATGCAAATATTGTTATGCAAATTGATGCCCTTGTGAgtatatgatctctgttgatttccttatatttttttctgcatgtactttcatttattcagttattttcttgtatcttaggcagttacaaacttctataatt...

Basic information

species Vitis vinifera
transcript Vv07s0031g02970.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 9
----ACACCTGTAAATGGATCTGTGAGTGATCATCAAAGATTGGGACCTGCTGGTCTTGCATTGCATTATGCAAATATTGTTATGCAAATTGATGCCCTTGTGAgtatatgatctctgttgatttccttatatttttttctgcatgtactttcatttattcagttattttcttgtatcttaggcagttacaaacttctataatt
      | |   | | | | | |  |   | ||  | ||||||||||| || || |||||||||||||||||||||||  | |  || |||||| | ||||| |||  |  |  |||| | |      || ||||||   | | | |  | |||| ||     | | |          ||   ||    |||  |  |      
CAGTGAAGCGCCACAAGAACCAGCTAAACACCACAATAGATTGGGACCAGCAGGCCTTGCATTGCATTATGCAAATATCATCAATCAGATTGATACTCTTgtaagttcacaaaatctgcttaacattctaaatttttaattac-tattttgtcatctagaagataaatcaaccaatatttcaacaccagcaatgtcatgag---

upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G046846_T01 (Zea mays), 5'ss of exon 9
----ACACCTGTAAATGGATCTGTGAGTGATCATCAAAGATTGGGACCTGCTGGTCTTGCATTGCATTATGCAAATATTGTTATGCAAATTGATGCCCTTGTGAgt--atatgatc------tctgttgatttccttatatttt--tttctgcatgtactttcatttattcagttattttcttgtatctta--ggcagttacaaacttc-tataatt---------------------------------------------------------------------------
      |     | | | | ||   |     | | | |||||||| || || ||||||||| ||||||||||||||||  | |  || |||||| | ||||| |||  | | ||||      ||| ||| ||||  | | |  |   || ||||  ||   ||| ||   |    | ||  | |  |  ||   | ||||        |  | || |                                                                           
CAGTGAAGAATCACAGGAACCTACCAAACGACGTAATAGATTGGGTCCAGCAGGTCTTGCACTGCATTATGCAAATATCATCAGTCAGATTGATACTCTTgtaagttcacaggatccactgttctattgttttctctgtgtcctgcattatgcaaatatcatcagtttgacctacagttcatggggttgtactagtagttttgtgtgccacacaaattgaatttgttgtgctaagaaaatcattttttttgtttcttttctggtagcctaacaagggttgatcaattgacag

upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G097502_T01 (Zea mays), 5'ss of exon 8
------ACACCTGTAAATGGATCTGTGAGTGATCATCAAAGATTGGGACCTGCTGGTCTTGCATTGCATTATGCAAATATTGTTATGCAAATTGATGCCCTTGTGAgtatatgatctctgtt---gatttcct-----tatatttttttctgcatgtactttcat-----ttattcagttattttcttgtatcttaggcagttacaaacttctataatt-----------------------------------
      | | |   ||  | | |||  |   | ||| | ||||||||||| || || ||||||||||||||||| |||||  | |  || |||||    ||||| |||  |    ||||  |   ||| |  |     |||||  || |  | |  ||  ||  |     || | ||   |   | ||  ||   |   |||  | ||||||  |  ||                                   
CAGTGAAGAGCCACAA--GAACCTGCCAAACACCATAATAGATTGGGACCAGCAGGCCTTGCATTGCATTATGCTAATATCATCAATCAGATTGACAATCTTgtaagtccacatactcttctagagatcttatcgaactatatcgttattagaagataacttggtgaacattgtacatcaaccatatt-cattgcaataagtctccaacttcagttttttcacaatattttaataaggattggtcaattggtag

upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G38370.1 (Glycine max), 5'ss of exon 8
----ACACCTGTAAATGGATCTGTGAGTGATCATCAAAGATTGGGACCTGCTGGTCTTGCATTGCATTATGCAAATATTGTTATGCAAATTGATGCCCTTGTGAgtatatgatctctgttg-atttccttatatttttttctgcatgtactttcatttattcagttattttcttgtatcttaggcagttacaaacttctataatt
    | |||  | | ||||    ||||  |||  ||||||||||| ||||| || ||||| ||||||||||||||||| ||  | ||||||||| | |||||||||   | ||||   ||| |||| |||   |   | ||||    |  ||   ||| | |  ||| |||     || | ||    |    |  ||||| | | 
CCCCAAACCATTCATTGGACGCATGAGCAATCGCCAAAGATTGGGCCCTGCAGGCCTTGCTTTGCATTATGCAAATATAGTGCTTCAAATTGATACTCTTgtgagt---taatcttcattgtatttacttcattccatgtctgttcttttttgtttttgtgcc-ttactttgaaccatgtgagaatttattgagtttctaaagt-

upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 7
----ACACCTGTAAATGGATCTGTGAGTGATCATCAAAGATTGGGACCTGCTGGTCTTGCATTGCATTATGCAAATATTGTTATGCAAATTGATGCCCTTGTGAgtatatgatctctgttgatttccttatatttttttctgcatgtactttcatttattcagttattttcttgtatcttaggcagttacaaacttctataatt----
    | |||  | | ||||    ||||  |||  ||||||||||| ||||| || ||||| ||||||||||||||||| ||  | ||||||||| | |||||||||   | ||||   |||  ||     || ||  |||   || |  |||  |||  |   |||  ||     || | ||         |  ||||| | ||    
CCACAAACCATTCATTGGACACATGAGCAATCGCCAAAGATTGGGCCCTGCAGGCCTTGCTTTGCATTATGCAAATATAGTGCTTCAAATTGATACTCTTgtgagt---taatcttcattgtatt-----tacttcattccatatctgttttttttttgtgccttaccttgaaccatgtgagaattaattgagtttctaaagttgctt

upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G16690.1 (Glycine max), 5'ss of exon 8
----ACACCTGTAAATGGATCTGTGAGTGATCATCAAAGATTGGGACCTGCTGGTCTTGCATTGCATTATGCAAATATTGTTATGCAAATTGATGCCCTTGTGAgtatatgatctctgttgatttccttatatttttttctgcatgtactttcatttattcagttattttcttgtatcttaggcagttacaa--acttctataatt
      |||  ||| ||||  | ||||  ||   ||||||||||| ||||| || ||||| |||||| |||||||||| ||  | ||||||||| | |||||||||   | |||| |||  |||| ||    | | | ||||    |  |||   |  | |  | |   |  || |  ||  |    || |    ||||| |  | 
CCATGGACCATTAACTGGACATATGAGCAATTGCCAAAGATTGGGCCCTGCAGGCCTTGCTTTGCATCATGCAAATATAGTGCTTCAAATTGATACTCTTgtgagt---taatctttgt--atttactacattctatctctgttctttttttgtgtcttaccttgaacctagtgaaaattgagtttctagagttgcttctcttgt-

upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G08660.1 (Arabidopsis thaliana), 5'ss of exon 9
----ACACCTGTAAATGGATCTGTGAGTGATCATCAAAGATTGGGACCTGCTGGTCTTGCATTGCATTATGCAAATATTGTTATGCAAATTGATGCCCTTGTGAgtatatgatctctgt-tgatttccttatatttttttctgcatgtactttcatttattcagttattttcttgtatcttaggcagttacaaacttctataatt
     || |    || ||| |||      || || ||||||||||||||||||||||||| || ||||||||||||||  || |||| |||||  | |||||||||  |  | |   |  |  |||| ||   |||  ||     |||||||   | |||||  | | |      ||||  | |    |   ||    ||||   
TCAACCATCGAAGAAAGGAGCTGCAGAATATGATAAAAGATTGGGACCTGCTGGTCTTGCTTTACATTATGCAAATATAATTGTGCAGATTGACACACTTgtgagtgcacaaacgtagcattgtttcatttggtttggttggttctgtacttctgtgtattctctcaatc----atatcgcatgtgtgtttcaatgggtatag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718502|gb|FC069286.1|FC069286
EST:     CTTGCATTGCATTATGCAAATATTTGTTATGCAAATTGATGCCCTTGT-A                         GGTAAATCAAGTAATATGCCTCCAAG
genomic: CTTGCATTGCATTATGCAAATATT-GTTATGCAAATTGATGCCCTTGTGAgtatatgatc ... attcaggtagG-TAAATCAAGTAATATGCCTCCAAG