Sequence
atgc intronic sequence ATGC exonic sequenceGTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAGgtaattttcttttatttgccactcttcttcttcttcttcttttttcccggatgtattctttggtatattattatgggacaattgtgttttggacttagtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G36170.1 (Glycine max), 5'ss of exon 8
GTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAGgtaattttcttttatt-------tgccactcttcttcttcttcttctt--ttttcccggatgtattctttggtatatt---attatgggacaattgtgttttggacttagtt
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GTCCACCTGGCTCCTGGAAGTAAATTTAATTTCCAAAAGTATATCAAAAGATCATTAGAAGATGACTTCAAGGTGGTCGTGGGAGTTAGgtaaaactaacaagtaacaacagtaaaatgtatatgcaacattatattagtattatgtaaggtttttccttgtatattggaaatctgtgctaactatgttattgacag----
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G09270.1 (Glycine max), 5'ss of exon 8
GTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAGgtaat-tttcttttatttgccactcttcttc------ttcttcttcttttttcccggatgtattctttggtatattat-tatgggacaattgtgttttggacttagtt
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GTCCACCTGGCTCCTGGAAGTAAATATAATTTCCAAAAGTTTATCAAAAGATCATTAGAAGATGACTTCAAGGTGGTTGTGGGAGTCAGgtaacactagtaacaacagtaaaatgtatacgcaacattatatttgtattatgtaaggtttttccttctatatttgaaatgtgtgctaactatgttattgacag----
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G32920.1 (Glycine max), 5'ss of exon 4
GTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAGgtaattttcttttatttgccactcttcttcttcttcttcttttttcccggatgtattctttggtatattattatgggacaattgtgttttggacttagtt-----
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GTTCACCTGGCTCCTGGAAGTAAATTTAACTTCCAAAAGTATATCAAAAGATCCTTGGAGGATGACTTCAAGGTAGTTGTTGGAGTCAGgtaacactcttctacacatgcatctgtagcatcttatcatctat-----gatttttccaatggtatcttgttt---gacatatattctcactattttgttgacag
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA16G21510.1 (Glycine max), 5'ss of exon 8
GTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAGgtaattttcttttatttgc-cact-----cttcttcttcttcttcttttttcccg-gatgtattctttggtatattattatgggacaattgtgttttggacttagtt
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GTCCACCTGGCTCCTGGAAGTAAATTTAACTTCCAAAAGTATATCAAAAGATCCTTGGAGGATGACTTCAAGGTAGTTGTTGGAGTCAGgtaacactcttttactcgtgcatttgtagcatcatattgtctatcgtttttccagtggtaacttgtttgacatac------atgctcactatgttgttgacag----
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G17480.1 (Arabidopsis thaliana), 5'ss of exon 8
GTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAGgtaattttcttttatttgccactcttcttcttcttcttcttttttcccggatgtattctttggtatattattatgggacaattgtgttttggacttagtt
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GTTCATTTAGCTCCAGGAAGTCAATTTAACTTCCAAAAATACATTAAAAGATCGTTGGAGGATGATTTCAAGGTAGTCGTTGGAGTCAGgtaaacttataacact---ctcttacttacattgaataattttctttcaacactaatgat-agtgtcttattgcag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688552|gb|EC920354.1|EC920354EST: TATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAG TCCTGTGTTATGGGCATCGTTTGTGATTTTCTTGCTCCTAAATGTTAGCG
genomic: TATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAGgtaattttct ... atgctggcagTCCTGTGTTATGGGCATCGTTTGTGATTTTCTTGCTCCTAAATGTTAGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAGgtaattttcttttatttgccactcttcttcttcttcttcttttttcccggatgtattctttggtatattattatgggacaattgtgttttggacttagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggacaa