Sequence
atgc intronic sequence ATGC exonic sequenceGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAGgtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggtttatgttttaattttgttctctttttctcttacccttcttatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 8
GGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAGgtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggtttatgttttaattttgttctctttttctcttacccttcttatag
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GGCAAGGCAAAGAAAGTTGTTTCAGCACAGGCGCTCTGGTTTGACATTTTGAAGGCACAGATAGAAACTGGAACACCATATATGCTTTATAAGgtg---tgcaattcataaagggaa-cagtagtttgcctacaattctgttgccacatatgcttatttctgaaatctggtctgcag--------------------
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 8
GGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAGgtggttt-----ataaattctat-gcaaaa-----tcatttctgctcccatgattctttt---tatttggtggtttatgttttaattttgt-tctctttttctcttacccttcttatag-----
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GGCAAGGCAAAGAAAATTGTCCCAGCTCAGACCCTCTGGTTTGACATTTTAAAGGCACAGATAGAAACTGGTACACCATATATGCTTTACAAGgtaaatttggtagcaaaattagtagcaaggagtacttgattttggacccaagattcctccaaatatgctgctggctatagtcaggttccaagtattcattccgaatgctcttgttgtcccacag
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 8
GGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAGgtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggtttatgttttaattttgttctctttttctcttacccttcttatag
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GGCAAGGCAAAGAAAGTTGTTCCGGCACAGACCCTTTGGTTTGACATTTTGAAGGCACAGATAGAGACTGGTACACCATATATGCTTTATAAGgtacatt-tggtagctatcaaatagtagtaccttctagatttgtctgttttgccaaaattttccacggtaagggtttcttgtaatggctattaactgtatgcag
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 8
GGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAGgtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggtttatgttttaattttgttctctttttctcttacccttcttatag
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GGCAAGGCAAAGAAAGTTGTTCCTGCACAGACCCTCTGGTTTGACATTTTGAAGGCACAAATAGAGACTGGTACACCTTATATGCTTTACAAGgtacatt-tagtggctatcaaataggagtacctcctatttttgtctcttttgccaaaagtttccagttaaggatttcttgtaatggctattaactgtat-gcag
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 8
GGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAGgtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggtttatgttttaattttgttctctttttctcttacccttcttatag
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GGAAAAGCAAAGAAGGTTGTTCAGGCACAGAATCTCTGGTTTGAAATTTTGAAGTCCCAGATAGAAACTGGAACTCCTTACATGCTTTTTAAGgtggtttacaaatgc-atgtttaacttttgctaggtttctatttcagtgcattttgta-tttat-ttttcattgaaacctcttcctttttctatatcctag---
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 8
GGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAGgtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggttt-atgttttaattttgttct-ctttttctcttacccttcttatag
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GGAAAAGCAAAGAAGGTTGTCCAGGCACAGAACCTCTGGTTTGAAATTCTGAAGTCACAGATAGAAACTGGAACCCCTTACATGCTTTTTAAGgtggaacac---ttagatgt----cttttactttccccatgagattttgtatttattgttttcacctgttgaataaatccaacatttttatttacactactag---
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 8
GGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCT--GGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAGgtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggtttatgttttaattttgttctctttttctcttacccttcttatag
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-------CAAAGAAGGTTGTTCAGGCACAGAATCTCTCTGGTTTGAAATTTTGAAGTCCCAGATAGAAACTGGAACTCCTTACATATTTTTTAAGgtggtttacaaatgct-tgtttgacttttgctaagtttctg--tcagtgcattttgtattt---attttcattgaaacctcttcatttttctatatcctag---
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 8
GGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAGgtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggtttatgttttaattttgttct--ctttttctcttacccttcttatag
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GGAAAAGCAATGAAGGTTGTCCAGGCACAGAGCCTCTGGTTCGAAATTCTGAAGTCACAGATAGAAACCGGAACCCCCTACATGCTTTTTAAGgtggt------gttct-tagatgtctttgactttcctcatgagattttgtatttattgttttcacccgttgagtaattccagcatttttgtttacactactag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714052|gb|FC064127.1|FC064127EST: AAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG GATTCTTGCAATNNNNNNNGTAATCAACAGAATCTGGGTACCATTAAATCT
genomic: AAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAGgtggtttata ... cttcttatagGATTCTTGCAATAAAAAAAGTAATCAACAGAATCTGGGTACCATTAAATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAGgtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggtttatgttttaattttgttctctttttctcttacccttcttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT