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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCGGTTGTAGCAATGGCTGGACTTGCAGCAGAAGGCCTGCAATATGACAAAGTGGTTGGTCAATCTGCCGATCTTTTCACTCTTCAGgtttgttctaacttccatttccctatcacgaagctttccacaaatccaactttgatctataatctcaactccctgcttcccatgttctcttcag

Basic information

species Vitis vinifera
transcript Vv07s0031g01560.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os04g54640.2 (Oryza sativa), 5'ss of exon 8
GTTGGCGGTTGTAGCAATGGCTGGACTTGCAGCAGAAGGCCTGCAATATGACAAAGTGGTTGGTCAATCTGCCGATCTTTTCACTCTTCAGgtttgttctaacttc--catttccctatcacgaagct---ttccacaaatccaactttgatctataatctcaactccctgcttcccatgttctcttcag---------
||| || || ||  ||||||| || || || || ||||| ||  ||||||||||||| || |||||||| || ||||||||||| ||||||||   |    | |||  ||| ||| | |        |   || |  |  |        ||| | | ||   || | | ||   | ||||     ||| |         
GTTAGCTGTAGTGTCAATGGCAGGGCTCGCTGCTGAAGGTCTAGAATATGACAAAGTTGTCGGTCAATCGGCAGATCTTTTCACCCTTCAGgtgattcacgaattcatcatctcctttttttagttttatatttccaaggtgttctcgggatatttcatgataaatgcatgaa-cacatgcatatttctgtgcttttag

upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G004352_T01 (Zea mays), 5'ss of exon 8
GTTGGCGGTTGTAGCAATGGCTGGACTTGCAGCAGAAGGCCTGCAATATGACAAAGTGGTTGGTCAATCTGCCGATCTTTTCACTCTTCAGgtttgttctaacttccatttccctatcacgaagctttccacaaatccaactttgatctataatctc----aactccctgcttcccatgttctcttcag-----------
||| || || ||  ||||||| ||||| || || ||||| ||  ||||||||||||| || |||||||| || ||||||||||| ||||||||   ||   | ||     |  |    |  |  || |  |     |||  |||  |||||| | |      | | ||  ||    |  ||| | |  |           
GTTAGCTGTAGTTTCAATGGCAGGACTGGCTGCTGAAGGTCTAGAATATGACAAAGTTGTAGGTCAATCAGCAGATCTTTTCACCCTTCAGgtgctttaagagtttatcatgtcctcaataattctatttattg--ccacattttctctatattttttagagaattccatctgaagaatttcccgtttgtttgcttgtag

upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G31720.1 (Glycine max), 5'ss of exon 8
GTTGGCGGTTGTAGCAATGGCTGGACTTGCAGCAGAAGGCCTGCAATATGACAAAGTGGTTGGTCAATCTGCCGATCTTTTCACTCTTCAGgtttgttctaacttccatttccctatcacg-aagctttccacaaatccaactttgatctataatctcaactccctgcttcccatgttctcttcag
 ||||| |||||  ||||||||||||| |||||||||||  |   ||||||||| ||||||||||||||||| |||||||||| ||| ||||||   |   |  || ||||   | | |     |  |   | |   |   |  | ||||  |||   ||  |           | ||| || |||
ATTGGCTGTTGTGTCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagt---atctctatttttttgtaagatgtggatattatactactcgcaattatctcaaataataatactagaaagttttttttccctgcag

upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G14970.1 (Glycine max), 5'ss of exon 8
GTTGGCGGTTGTAGCAATGGCTGGACTTGCAGCAGAAGGCCTGCAATATGACAAAGTGGTTGGTCAATCTGCCGATCTTTTCACTCTTCAGgtttgttctaacttccatttccctatcacgaa-gctttccacaaatccaactttgatctataatctcaactccctg-----cttcccatgttctcttcag
 ||||| |||||  ||||||||||||| |||||||||||  |   ||||||||| ||||||||||||||||| |||||||||| ||| ||||||   |   |  || ||||   | | |     |  |   | |   |  ||| | || | ||||   ||  |          |     |  |  || |||
ATTGGCTGTTGTGTCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCAGTCTCCAGgttaagt---atctctatttttttgtaagatgtggatattatactactcactattatatctaataataatactagaaagaattgttttttgttcctgcag

upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G21960.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTGGCGGTTGTAGCAATGGCTGGACTTGCAGCAGAAGGCCTGCAATATGACAAAGTGGTTGGTCAATCTGCCGATCTTTTCACTCTTCAGgtttgttctaacttccatttccctatcacgaagctttccacaaatccaactttgatct--ataatctcaactccctgcttcccatgttctcttcag
|||||| | ||| ||||||||||||||||| || || || ||| | |||||||||||  |||| |||||||| ||||| ||| ||||||||||    ||||  |    ||  |  |||||  |  | | |||      | ||  | | |   | ||  || || | | |||    |||   || |||
GTTGGCTGCTGTTGCAATGGCTGGACTTGCCGCCGAGGGTCTGAAGTATGACAAAGTAATTGGCCAATCTGCAGATCTCTTCTCTCTTCAGgtcc--tctagttcattttatctcatcactcacatgttcacttggt-agctcaggttttagttattacagcttctt-ctttttttgtctcctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32270105|gb|CD719264.1|CD719264
EST:     TGCAATATGACAAAGTGGTTGGTCAATCCGCCGATCTTTTCACTCTTCAG                         AGATTTATAAACCGTAGCAAGCCACAGCTCAGCAAAGATCAGCAACAAAAT
genomic: TGCAATATGACAAAGTGGTTGGTCAATCTGCCGATCTTTTCACTCTTCAGgtttgttcta ... ttctcttcagAGATTTATAAACCGTAGCAAGCCACAGCTCAGCAAAGATCAGCAACAAAAT