Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttcttctgcatccttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcag

Basic information

species Vitis vinifera
transcript Vv07s0031g00920.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os10g22450.1 (Oryza sativa), 5'ss of exon 8
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgt-------------ctgttttcttctgcatccttat-gggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttca----attttgcag
|||||||||||||||||| ||| | || || ||||||||| | ||  | ||||| || || |||||||||||| | |||||||||||||||||||   ||||             |  |    |  ||||    ||| || |    |    ||    | | || |  |  |      ||  |  |   ||||     ||| |||||
CAACACCTGCGAGGACTCGCTCCTCGCCGCGCCCATCATCCTCGACCTCGTCCTCCTCGCCGAGCTCAGCACCAGGATCCAGCTCAAAGCTGAAGACCAGgtaacaacagcaatgcaatcacatcttgcacagatattggaatggacccagttcatctctgacaacgaactctctgaatctactgtccgttctgctcattgtgcag

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 8
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttcttctg-----catccttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcag
||||||||| |||||||| ||| | || || || |||||| | ||| |||| ||  | ||||||||||||||| | |||||||| |||||||| ||||||||  |    |  |        | ||| |  | || ||    |  | | |  ||  | ||| |  |||   |  | |  |  ||  || |||||
CAACACCTGTGAGGACTCGCTCCTCGCCGCACCTATCATCCTTGATCTGGTGCTCTTGGCTGAGCTCAGCACCAGGATCCAGCTGAAAGCTGAGGGAGAGgtaagagccccccaagtgattaacctgaaagcacgctgc-acgctaggtgatat-agcacttttaataccttctggtgt-ctctcttatgcag

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G071174_T01 (Zea mays), 5'ss of exon 3
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgt---ctgttttcttctgcatccttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcag
|||||||||||||||||| ||  | || || ||||||||| | || ||||| || || |||||||||||||| || || |||||||| || |||||  ||||   | | |    | |  ||     ||       |    ||||| |   |  || |      | | |||   |  || ||  || |||||
CAACACCTGCGAGGACTCGCTTCTCGCCGCGCCCATCATCCTTGACTTGGTGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAGgtgaacagatgagctatatatatgcttgcacaaaccagtgtttggatagaa--attattgacgacgtttctacgtttgctct-ttgtgcag

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 8
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttcttctgcatccttatgggaccctcttgctttggt-ttttaccatcacatggaatgattcataggatgttcaattttgcag
|||||||||||||||||| ||| | || || || |||||| | ||| |||| || || ||||||||||||||| | |||||| | ||| |||| |||  |||  |    |      |  |  | |    |    || ||  |   ||   ||         || ||  |  |  | |   ||| |||||
CAACACCTGCGAGGACTCGCTCCTCGCCGCACCGATCATCCTCGATCTGGTGCTCCTGGCTGAGCTCAGCACCAGGATCCAGTTAAAACCTGAGGGAACGgtaagagcccacgaataatccgaagcatgctgggtgattcagcgcttcggcaatcagcaccatcatctaacgtctctctcattatgcag

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G31450.4 (Glycine max), 5'ss of exon 5
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttct-tctgcatccttatgggaccctctt-gctttggtttttaccatca--catggaatgattcataggatgttcaattttgcag---
|||||| || ||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||||| || ||| || | |||||||||   ||||| |||  | | | ||   | | ||    |  ||   ||| |   | |||   | |    |  || || ||| | || ||| |    | ||    
CAACACATGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcatatatatgttgcttaatcattcattccaagctctatctcttatttttagttttttaaagactcaaatga-gtttatggcttcaacag

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G14670.2 (Glycine max), 5'ss of exon 8
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttcttctgcatc----cttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcag
|||||| || ||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||| || ||| || | |||||||||   ||||| ||   | |  ||| |      | ||   | |||||   | |  | ||||   |   |  || | |   ||  | |  |   |||  |||
CAACACTTGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaa--atgagtttatggctttaacag

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 8
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttcttctgcatccttatgggaccctcttgctt--tggtttttaccatcacatggaatg-attcataggatgtt-caattttgcag------------
|||||| || ||||| || || ||||||||||| || |||||||| |||||||||||||||||||| |||||  | |||||| | |||||||||   ||||||||  |      ||||   ||   ||   | ||||||  | || ||   |||   ||    |  |  | |  || ||  | || |||  |            
CAACACATGTGAGGATTCCCTTTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcat------gcattgctaaatgattttattgcttgattgtattcgtcattgtatttttttcagccttctgaggtcactatgttgtggtggttgatgcag

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 5'ss of exon 8
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttcttctgcatccttatgggaccctcttgctttggtttttaccatcacatggaat-gattcataggatgttcaattttgcag
||| |||||||||||||| |||||||||||||| |||||||||||| | || || || || |||||||||||| | |||||| ||||| | || ||||||||  ||    |       |   |||  |   |      |  ||||| ||     |  ||  | |||   | | |   ||  ||| ||||
CAATACCTGCGAGGACTCTCTCTTAGCTGCTCCAATCATCTTGGATCTTGTTCTCCTCGCGGAGCTCAGCACCAGGATCCAGTTCAAATCCGAGGGAGAGgttcgtcagttcacagtac---atgttattttgggttctctgttttcactgaaccgcggttttgatgttttgaaacatctttttggcag

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 5'ss of exon 6
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttcttctgcatccttat-gggaccctcttgctt--tggtttttaccatcacatggaatgattcataggatgttcaattttgcag
 ||||| || |||||||| ||||| ||||| || || ||||||||| | |||||||| ||||| ||||||||| | |||||  | ||||||||||||||||| ||| |||   |   |  |||    ||  |||  | ||  ||  ||||    |  ||||     ||  ||    | ||||         
TAACACTTGTGAGGACTCTCTCTTGGCTGCACCAATTATCTTGGATCTTGTCCTTCTCGCTGAACTCAGCACCAGAATCCAATTTAAAGCTGAAGGAGAGgtttgtattccgttagttagttaccaagaaactcgagattggtgagtttttttttttcatgtttgaatctattctct-ttcag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110380748|gb|EC946038.1|EC946038
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|32245283|gb|CD711102.1|CD711102
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110380224|gb|EC945471.1|EC945471
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|27581907|gb|CB004602.1|CB004602
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110371149|gb|EC934944.1|EC934944
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110703366|gb|EE080147.1|EE080147
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCANAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|27584208|gb|CB006903.1|CB006903
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110392888|gb|EC957465.1|EC957465
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|18458958|gb|BM437236.1|BM437236
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|27580032|gb|CB002727.1|CB002727
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110687646|gb|EE065294.1|EE065294
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|29784522|gb|CB345364.2|CB345364
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|32245038|gb|CD710857.1|CD710857
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|34546447|gb|CF514679.1|CF514679
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110698809|gb|EE076731.1|EE076731
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110367003|gb|EC930923.1|EC930923
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110686165|gb|EE063519.1|EE063519
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACNAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110715508|gb|EE093637.1|EE093637
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110699239|gb|EE076063.1|EE076063
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|30327700|gb|CD010962.1|CD010962
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110373349|gb|EC937577.1|EC937577
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110373310|gb|EC937535.1|EC937535
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110685059|gb|EE063046.1|EE063046
EST:     TCCTTCTTGCTGAGCTCAACACCCGCATCCAGCTCAAAGCTGAAAGAGAG                         GACAAGTTTCATTCCTTCCACC-AGTTGCCACCATCCTCAGTTACCTCAC-
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110426355|gb|EC992761.1|EC992761
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|28966389|gb|CB345422.1|CB345422
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|18458241|gb|BM436519.1|BM436519
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110707572|gb|EE084125.1|EE084125
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCANAGCTGAAAGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|33407001|gb|CF212628.1|CF212628
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|27581095|gb|CB003790.1|CB003790
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110706220|gb|EE081554.1|EE081554
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110394196|gb|EC958827.1|EC958827
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110393199|gb|EC958269.1|EC958269
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|83274450|gb|DV938547.1|DV938547
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCGGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110414138|gb|EC979964.1|EC979964
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|71871789|gb|DT020844.1|DT020844
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|27580245|gb|CB002940.1|CB002940
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|30327647|gb|CD010909.1|CD010909
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACC
EST: gi|34550186|gb|CF518404.1|CF518404
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTC-ACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110704772|gb|EE081830.1|EE081830
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|18458286|gb|BM436564.1|BM436564
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|32268348|gb|CD717507.1|CD717507
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|29784589|gb|CB345506.2|CB345506
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110699378|gb|EE076322.1|EE076322
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCNAC-ATCCTCAGTTACCTCAC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCC-ACCATCCTCAGTTACCTCAC
EST: gi|110426092|gb|EC992489.1|EC992489
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110415028|gb|EC980897.1|EC980897
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110396188|gb|EC961869.1|EC961869
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110397386|gb|EC963121.1|EC963121
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110730377|gb|EE107389.1|EE107389
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110398285|gb|EC964538.1|EC964538
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|32268456|gb|CD717615.1|CD717615
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110420851|gb|EC987136.1|EC987136
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110390762|gb|EC955689.1|EC955689
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|32249601|gb|CD715420.1|CD715420
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110374744|gb|EC939670.1|EC939670
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
EST: gi|110423521|gb|EC989867.1|EC989867
EST:     TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAG                         GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC
genomic: TCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttc ... aattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttcttctgcatccttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA