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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCATGCAGATAAACATCGTTATGGTGTTGTGCGAATGTTTGTTGGGCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACAgtaattatcctaacttacacaatatcattcctgtttgtgccatatacttctgtgttaggctatagttcaatctcattcatatgttggttgttttcttctc...

Basic information

species Vitis vinifera
transcript Vv07s0031g00820.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00820.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G39200.1 (Glycine max), 5'ss of exon 8
TGACCATGCAGATAAACATCGTTATGGTGTTGTGCGAATGTTTGTTGGGCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACAgtaattatcctaacttacacaatatcattcctgtttgtgccatat-acttctgtgttaggctatagttcaatctcattcatatgttggttgttttcttctc
||| |||||||||||| |||||||||||||||| |||  ||||||||| |||||||||||| ||||||||||||| ||||| ||||| || ||||| |||||||||| | |  |  |   |    |   | || |  | | || | |||| |  |||     |        | |      ||    || || |    | 
TGATCATGCAGATAAATATCGTTATGGTGTTGTCCGACAGTTTGTTGGCCATGGAGTTGGAAGTGTTTTTCATGCTGATCCTGTTATTCTTCACTATAgtaattatctttaactgtattcttctgtcattattagatctacatcaattctatactagcaacaaacctgtgtttagattagtgaatattattatggctt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26263072|gb|CA814135.1|CA814135
EST:     GCATGGAGTTGAACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACA                         GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
genomic: GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACAgtaattatcc ... ttctttctagGGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
EST: gi|34546470|gb|CF514702.1|CF514702
EST:     GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACA                         GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
genomic: GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACAgtaattatcc ... ttctttctagGGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
EST: gi|110381974|gb|EC938149.1|EC938149
EST:     GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACA                         GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
genomic: GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACAgtaattatcc ... ttctttctagGGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
EST: gi|110408483|gb|EC974119.1|EC974119
EST:     GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACA                         GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
genomic: GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACAgtaattatcc ... ttctttctagGGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
EST: gi|34546385|gb|CF514617.1|CF514617
EST:     GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACA                         GGAACAATGATGGTGGACACATGGAT-TTGAATCAAACCTTCACTATT
genomic: GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACAgtaattatcc ... ttctttctagGGAACAATGATGGTGGACACATGG-TGTTGAATCAAACCTTCACTATT
EST: gi|110429644|gb|EC996143.1|EC996143
EST:     GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACA                         GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
genomic: GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACAgtaattatcc ... ttctttctagGGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
EST: gi|33405491|gb|CF211118.1|CF211118
EST:     GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACA                         GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
genomic: GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACAgtaattatcc ... ttctttctagGGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
EST: gi|110387367|gb|EC952027.1|EC952027
EST:     GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACA                         GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG
genomic: GCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACAgtaattatcc ... ttctttctagGGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGACCATGCAGATAAACATCGTTATGGTGTTGTGCGAATGTTTGTTGGGCATGGAGTTGGACGTGTTTTTCATGCCGATCCAGTTATCCTACACTACAgtaattatcctaacttacacaatatcattcctgtttgtgccatatacttctgtgttaggctatagttcaatctcattcatatgttggttgttttcttctc

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