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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCATGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAGgtcaatatattttaaattttccttggcaccttatttttaatattttgaatgatgcaagtaatttttcttttcttttcttctttgacaacctcatgttcat...

Basic information

species Vitis vinifera
transcript Vv07s0031g00600.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G060977_T01 (Zea mays), 5'ss of exon 8
GATCATGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAGgtcaatatattttaaattttccttggcaccttatttttaata---ttttgaatgatgcaagtaatttttcttttcttttcttctttgacaacctcatgttcat
|| ||||| |||||||||||||||||||||||||||||||| |||   |||||||||   | ||    |  ||||||    ||  |   | | || |   ||||    | |  |  | |          |   ||  |||| |||     ||||  ||
GAACATGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgtttacgg-atgttttccagctcatttagatgtgaagagattttttcccggttgagttgagggggtggggcacatcagctttaacagaaa-atgta-at

upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G030902_T02 (Zea mays), 5'ss of exon 8
GATCATGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAGgtcaatatattttaaattttccttggcaccttatttttaatat-tttgaatgatgcaagtaatttttcttttcttttcttctttgacaacctcatgttcat-
|| ||||| ||||| |||||||||||||||||||||||||| |||   |||||||||     ||    |  ||||||    ||  |   | | || |  |||    | |  |  | |     |   ||    |  |    ||| | | |     || 
GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgcttacgg-atgttttccagctcatttagatgtgaagagattttttcggttgagttgagggggcgggtcacaacagcag-aacagctttaacaggatt

upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G030902_T03 (Zea mays), 5'ss of exon 9
GATCATGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAGgtcaatatattttaaattttccttggcaccttatttttaatat-tttgaatgatgcaagtaatttttcttttcttttcttctttgacaacctcatgttcat
|| ||||| ||||| |||||||||||||||||||||||||| |||   |||||||||     ||    |  ||||||    ||  |   | | || |  |||    | |  |  | |     |   ||                            
GAACATGGTTCAAAGGGGCATCGTGGAAttgggtttatcacgtttcagagtgcaggtacgcttacgg-atgttttccagctcatttagatgtgaagagattttttcggttgagttgagggggcgggtca---------------------------

upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G05940.1 (Glycine max), 5'ss of exon 8
GATCATGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAGgtca---atatattttaaattttccttggca--ccttatttttaatattttgaatgatgcaagtaatttttcttttcttttcttctttgacaacctcatgttcat
||||| || || |||  ||||||||||||||| || ||||| |||||||||||||||     || || | ||   | |   |   |  | | | |||   | | ||  |   || | | || || | ||||  ||||   ||     | || ||||    
GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGgttggccatctaatgtagcctgtgtgttctaatcttaagtttccgtgtgttttaaagtgtatggaagttatattttaatttccctttaatttatct-atgt----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415764|gb|EC981696.1|EC981696
EST:     TGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAG                         AATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTACTG
genomic: TGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAGgtcaatatat ... tatgttacagAATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTGCTG
EST: gi|349818091|gb|FQ408866.1|FQ408866
EST:     CACATTTGCAAGTGCAG                         AATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTACTG
genomic: CACATTTGCAAGTGCAGgtcaatatat ... tatgttacagAATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTGCTG
EST: gi|110429617|gb|EC996114.1|EC996114
EST:     TGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAG                         AATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTACTG
genomic: TGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAGgtcaatatat ... tatgttacagAATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTGCTG
EST: gi|351020076|gb|FQ445683.1|FQ445683
EST:     CACATTTGCAAGTGCAG                         AATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTACTG
genomic: CACATTTGCAAGTGCAGgtcaatatat ... tatgttacagAATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTGCTG
EST: gi|349811719|gb|FQ409716.1|FQ409716
EST:     CACATTTGCAAGTGCAG                         AATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTACTG
genomic: CACATTTGCAAGTGCAGgtcaatatat ... tatgttacagAATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTGCTG
EST: gi|349818104|gb|FQ408879.1|FQ408879
EST:     CACATTTGCAAGTGCAG                         AATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTACTG
genomic: CACATTTGCAAGTGCAGgtcaatatat ... tatgttacagAATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTGCTG