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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCATCAGTCCTGCTGATATCAATGCTGAGGAAACTCTTAATACTCTCAAATATGCTAATCGCGCTCGTAATATCCAGAATAAGCCTGTTgtaagtatctcagattaccttatctttttcccttatttcttgtcctattttcccctccttctcctcaatgtaattggagaaacttggtattgaaactccatacgttctggtgcctaatgaagaagccctttatcttattcag

Basic information

species Vitis vinifera
transcript Vv07s0031g00130.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os09g02650.1 (Oryza sativa), 5'ss of exon 8
CTTGCATCAGTCCTGCTGATATCAATGCTGAGGAAACTCTTAATACTCTCAAATATGCTAATCGCGCTCGTAATATCCAGAATAAGCCTGTTgtaagtatctcagattaccttatctttttcccttatttcttgtcctattttcccctccttctcctcaatgtaattggagaaacttggtattgaaactccatacgttctggtgcctaatgaagaagccctttatcttattcag
| || || ||||| || |||||||||||||| ||||| || || ||| | ||||||||||| ||||||||||| ||||||||||||||  ||||||||   | | | |      |||  |      | |   || | | | |   | |  |  | ||  |  |||||||      |||||   |    || |   | |    || |      | |    ||||    | |||||
CCTGTATTAGTCCAGCAGATATCAATGCTGAAGAAACACTGAACACTTTGAAATATGCTAACCGCGCTCGTAACATCCAGAATAAGCCAATTgtaagttcattaaaatg----gtctcgtcagaaaagtatctgacatttatctgcgttatgtttctttaattaattgg-----tttggttccg----tcaaggtgattatttgacatccctatatttactttcctattttcag

upper sequence: Vv07s0031g00130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 4
CTTGCATCAGTCCTGCTGATATCAATGCTGAGGAAACTCTTAATACTCTCAAATATGCTAATCGCGCTCGTAATATCCAGAATAAGCCTGTTgtaagtatctcagattaccttatctttttcccttatttcttgtcctattttcccctccttctcctcaatgtaattggagaaacttggtattgaaactccatacgttctggtgcctaatgaagaagccctttatcttattcag
||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| || || ||||||||||| || ||||||||||| |||||| ||    |||        || ||   | | |||||||||| || |       ||  | |      ||  ||| |  | |  |  |  |  | |||| ||| | ||   || ||   ||                  
CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTAgtaagtttccacaatt------ctttgttatttaagttcttgtcctgttct-------ttgccttaggaagaagaggaaattcattctggtctagtttcatatgttatagtctata-tggttaattttacag----------

upper sequence: Vv07s0031g00130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G15750.1 (Glycine max), 5'ss of exon 8
CTTGCATCAGTCCTGCTGATATCAATGCTGAGGAAACTCTTAATACTCTCAAATATGCTAATCGCGCTCGTAATATCCAGAATAAGCCTGTTgtaagtatctcagattaccttatctttttcccttatttcttgtcctattttcccctccttctcctcaatgtaattggagaaacttggtattga--aactccatacgttctggtgcctaatgaagaagccctttatcttattcag
||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| || || ||||| ||||| || ||||||||||| |||||| ||    |||              | || || |||    |||| |||  | |||  ||| |  | |  ||  |||| |   | | |   |  | |||| ||| |  |   || ||   |     ||||          
CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTGgtaagtttccacaatt--------------ctttgttacttaagttattgtcctgttctttgccttag-gaagatgaggaaattcattctggtctagtttcatatgttataatctatattgttaa----ttttacag-------

upper sequence: Vv07s0031g00130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G50240.1 (Arabidopsis thaliana), 5'ss of exon 8
CTTGCATCAGTCCTGCTGATATCAATGCTGAGGAAACTCTTAATACTCTCAAATATGCTAATCGCGCTCGTAATATCCAGAATAAGCCTGTTgtaagta-----------tctcagattaccttatctttttcccttatttcttgtcctattttc---ccctc--cttctcctcaatgtaattggag--aaacttggtattgaaact---------ccatacgttctggtgc-ctaatgaagaagcc--ctttatct---tattcag
||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||           ||| |||| | |||    |||| |   ||        | | | ||   |  ||  ||    |  || |||  ||  |  |||      ||| ||||             | |  |  || || ||||     ||| |  |||||| |   |   |||
CTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTTgtaagtaccaaggaactatcttagatgagctttcaatttttctgcatacagaactccactatcaggctatcagctaacacaaaaagtacatgaggccaaaaaatagattaaaacaggactaagattgttcacttcggagcactaacaggaaaggcttctttatttgggtgcacag