1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGAGTCAGGAGTTTACAGATACACCACAGGCGATGTCATGGGAGGTCATGCCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctctatctgttcctatttatcatattctataaccatagattttattttggttctatttatcatcttttataaccgtagattttgtctaagataatttcttgattatgtattctttgttgcag
species | Vitis vinifera |
transcript | Vv07s0005g02820.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|34545710|gb|CF513942.1|CF513942
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCCCCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|110716152|gb|EE090883.1|EE090883
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|161711642|gb|FC061266.1|FC061266
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|22012339|gb|BQ797373.1|BQ797373
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCCCCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|110717706|gb|EE093795.1|EE093795
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|30302325|gb|CB979119.1|CB979119
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|110375663|gb|EC940672.1|EC940672
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|352764436|gb|FQ472793.1|FQ472793
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|26262146|gb|CA813209.1|CA813209
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|110703469|gb|EE080340.1|EE080340
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|110379925|gb|EC945151.1|EC945151
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|110731310|gb|EE105611.1|EE105611
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|351041020|gb|FQ443796.1|FQ443796
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|110420331|gb|EC986603.1|EC986603
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACTGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|110406529|gb|EC972106.1|EC972106
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACTGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|110396856|gb|EC962558.1|EC962558
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|110406274|gb|EC971841.1|EC971841
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACTGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|351027477|gb|FQ444726.1|FQ444726
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|110426643|gb|EC993059.1|EC993059
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACTGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|110360706|gb|EC924023.1|EC924023
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGATEST: gi|34545624|gb|CF513856.1|CF513856
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGTCAGGAGTTTACAGATACACCACAGGCGATGTCATGGGAGGTCATGCCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctctatctgttcctatttatcatattctataaccatagattttattttggttctatttatcatcttttataaccgtagattttgtctaagataatttcttgattatgtattctttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT