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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGGACTTCACCAGGCGGTTGAAGCAAAAGAAGGGTTGCCCATTCAAAATGAAACTGTGACGCTAGCCTCAATCAGTTATCAGAACTTCTTTCTCCAGgttggaacatcttatttcccaaatcatttcatgaagcatgtttggatatttactttccatcttctagctttctagtgttaatttctattcactgttgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g02610.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g21820.1 (Oryza sativa), 5'ss of exon 6
CGATGGACTTCACCAGGCGGTTGAAGCAAAAGAAGGGTTGCCCATTCAAAATGAAACTGTGACGCTAGCCTCAATCAGTTATCAGAACTTCTTTCTCCAGgttgg-aacatcttatttcccaaatcatttcatgaagcatgtttggatatttactttccatcttc-tagctttctagtgttaatttctattcactgttgcag
 ||||| |||||||| ||  ||||||| ||||||||  | || || |||||||||||  | || || || ||||| |||||||||||||||||||| ||||   |  |||  || ||||| |            |  ||    ||  | | |  | |  |   |   |    || | || | ||  | |||     | ||  
TGATGGTCTTCACCAAGCAATTGAAGCTAAAGAAGGTGTACCTATACAAAATGAAACAATTACCCTTGCGTCAATAAGTTATCAGAACTTCTTTCTACAGgcaagtgacaatttttttccaatgctggaaagctactcacacatgattgtatgatatgtaaaatggcaagcatccattgatcatacccattgttactagc--

upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G01060.3 (Glycine max), 5'ss of exon 8
CGATGGACTTCACCAGGCGGTTGAAGCAAAAGAAGGGTTGCCCATTCAAAATGAAACTGTGACGCTAGCCTCAATCAGTTATCAGAACTTCTTTCTCCAGgttggaacatcttatttcccaaatcatttcatgaagcat-gtttggatatttactttccatct---tctagctttctagtgttaatttctattcactgttgcag
 ||||| |||||||| || ||||| ||||| ||||||||||| ||||||||||||||||| ||||| || || |||||||| ||||| |||||||| |||||||||| || || | ||  |  | |||   |||| |||  |||    ||||  ||| | | |     || |||  |  | | ||   | ||  ||   |  ||
TGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGGTTGCCAATTCAAAATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAGgttggaa-atgttgtatctgagctgattaagtgaaccatcatttcagaatttcatttgcctttgaacttaccttgatgttttcaaa--ccatgtacctctatag

upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G27810.1 (Glycine max), 5'ss of exon 8
CGATGGACTTCACCAGGCGGTTGAAGCAAAAGAAGGGTTGCCCATTCAAAATGAAACTGTGACGCTAGCCTCAATCAGTTATCAGAACTTCTTTCTCCAGgttggaacatcttatttcccaaatcatttcatgaagcatgtttggatatttactttccatcttctagctt--tctagtgttaatttctattcactgttgcag
 ||||| |||||||| || ||||| ||||| ||||||||||| ||||||||||||||||| ||||| || || |||||||| ||||| |||||||| |||||||||| || || | ||  |  | ||    |||| |||  ||  | | || | ||    |||  | |||    |  || |     | ||  ||   | |||
TGATGGTCTTCACCAAGCAGTTGAGGCAAAGGAAGGGTTGCCAATTCAAAATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTGCAGgttggaa-atgttgtatctgagctgataa-gtgaatcatcatttcagaatttcattt-gcctttgaacttaccttgatgctttcaaccatgtacctctacag

upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 5'ss of exon 7
CGATGGACTTCACCAGGCGGTTGAAGCAAAAGAAGGGTTGCCCATTCAAAATGAAACTGTGACGCTAGCCTCAATCAGTTATCAGAACTTCTTTCTCCAGgttggaacatcttatttcccaaatcatttcatgaagcatgtttggatatttactttccatct-tctagctttctagtgttaatttctattcactgttgcag
 |||||||| || || || ||||||||||||||||| ||||| ||||| |||||| || | || || || ||||| |||||||| ||||||||||| ||||||||||   | || || |||      ||  |||    |||||| ||  | |  |   || | | |    || |||                         
TGATGGACTACATCAAGCTGTTGAAGCAAAAGAAGGCTTGCCTATTCAGAATGAATCTATTACTCTGGCGTCAATTAGTTATCAAAACTTCTTTCTGCAGgttggaaatgcatactttcca-----ctttttgattattgtttgcattgtaatgtataatatcttttatgttgtag-------------------------