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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaacacattgtacatggcttatgccttacattttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcag

Basic information

species Vitis vinifera
transcript Vv07s0005g02100.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os05g04340.2 (Oryza sativa), 5'ss of exon 8
CTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaa-cacattgtacatggcttatgcctt-acattttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcag--
|||  |||| || || || ||||||||||| ||||||||||| ||||| |||||| | ||||| ||||| |||||  | |||||||| || || || || |||||  | |||||| |  |    | | || ||   |   |  |  || ||   | | | |   ||||    ||    | ||||| | | |   
CTACAGAGCTCCAGAGCTCATATTTGGTGCTACTGAATACACAACAGCGATTGATGTTTGGTCTGCCGGTTGTGTGCTTGCTGAACTCCTCCTGGGGCAGgtaagagatcacattatttaca--tgaggcttttggaccatccagctcattgcaactgtctgc-ctaagctttatcctttttttgttttaaaag

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g19150.4 (Oryza sativa), 5'ss of exon 7
CTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaacacattgtacatggcttatgccttacattttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcag
|||  |||| || ||||| |||||||| || || || ||||| ||||| |||||| | ||||| || ||||||||| | ||||||||||| || || || ||||| |      |  || | | |     | ||||||    | || |||      |  | |   ||| | |   | |   ||        
CTACAGAGCCCCAGAACTCATATTTGGGGCTACAGAGTACACGACAGCTATTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAGgtaagaag-----tcaacctagttgtcatcatacattacccaatttcttgaagcaacttctctgaattatttgctgttggttag------

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G155836_T01 (Zea mays), 5'ss of exon 8
CTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaacacattgtacatggcttatgccttacattttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcag
|||  |||| || || || ||||||||||| ||||||||||| |||||||||||| | ||||| || ||||||||  | ||||| || || || ||||| |||||  |  || |  |  |  | |  | | |   |    ||   |   ||   | ||  | | |     |  || | |||| |      
CTACAGAGCTCCAGAGCTCATATTTGGTGCTACTGAATACACAACAGCCATTGATGTTTGGTCTGCTGGCTGTGTGCTCGCTGAGCTGCTTCTAGGACAGgtaagtgat-cactccatgta-cgtgggtcatcagtggactaccccagcttatgtctgcctacaatctgattgttcttttttaacag---

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G01220.1 (Glycine max), 5'ss of exon 8
CTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaacacattgtacatggcttatgccttacattttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcag
|||| |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||  | | ||||||| ||||||| || |||     |   ||    |||  | ||  ||   ||||   |||  | | |    | | ||  ||||||  | || ||| ||| ||| ||
CTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgctt-ttaagtatgtttgat-tctgctatttagaattcacatctgtgcaagaat--taataatgaatt-tctgttgttgttag

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G01220.3 (Glycine max), 5'ss of exon 8
CTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaacacattgtacatggcttatgccttacattttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcag---------------
|||| |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||  | | ||||||| ||||||| || |||     |   ||    |||  | ||  ||   ||||   |||  | | |    | | ||  ||||||  | || ||| ||| ||| ||               
CTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgctt-ttaagtatgtttgat-tctgctatttagaattcacatctgtgcaagaat--taataatgaatt-tctgttgttgttagcctctattccctggt

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G01280.1 (Glycine max), 5'ss of exon 8
CTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaacacattgtacatggcttatgcc-ttacattttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcag
|||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || |||||  | | ||||||| ||||||| || |||     |   ||    |||  | || |   || ||||   |||  | | |    | | |  |||||||  | || ||| | | ||| ||
CTATAGAGCACCTGAACTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATTTGGTCAGCTGGTTGTGTACTTGGTGAACTAATGCTTGGCCAGgtatcttgctt-ttaagtatgtttgattctgctatatttagaattcacatctgtgcaggaa--ctaataatgaatt-tctatcgttgttag

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 8
CTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaacacattgtacatggcttatgccttacattttttatttcctttttaat-atgtatgctaataagtacttatcttttgatgtcag
 || || || || ||||||||||||||||||||||| ||||| |||||||| || ||||||||  | || || ||| |||||||  |||| ||||| || ||     ||    |        ||  | | |||      | |    ||  | ||| || |   ||    ||                    
TTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCTGGTCGACTGGATGCGTTCTGGCTGAGTTACTTCTTGGTCAGgttgtatacctcgtccttgcaactcttccattatgccactcaccgtctcatcaatcatttccactgtgcag--------------------

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 8
CTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaacacattgtacatggcttatgccttacattttttatttcctttttaat-atgtatgctaataagtacttatcttttgatgtcag
||| || || || ||||||||||||||||||||||| ||||| |||||||| || ||||||||  | || || ||| |||||||  |||| ||||| || ||     ||    |        ||  | | |||      | |    ||  | ||| || |   ||    ||                    
CTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCTGGTCGACTGGATGCGTTCTGGCTGAGTTACTTCTTGGTCAGgttgtatacctcgtccttgcaactcttccattatgccactcaccgtctcatcaatcatttccactgtgcag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33405137|gb|CF210764.1|CF210764
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|26262991|gb|CA814054.1|CA814054
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|161712353|gb|FC061927.1|FC061927
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|110360806|gb|EC924193.1|EC924193
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|30133168|gb|CB918507.1|CB918507
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATT
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATT
EST: gi|110710881|gb|EE087442.1|EE087442
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTGCTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|33405222|gb|CF210849.1|CF210849
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|110383074|gb|EC947423.1|EC947423
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|110378688|gb|EC943832.1|EC943832
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|110700287|gb|EE078155.1|EE078155
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|30252766|gb|CB970317.1|CB970317
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG