Sequence
atgc intronic sequence ATGC exonic sequenceCAAATAAAAAACCCCAACTACAAGGGAAAATGGAAGGCACCTATGATTGACAACCCAGgttcttgcatattccacttcaacattttaatttgtttgcagtcttggtgttctttaatgttattttctaatactgatatattttcaacatcttaaatttgtgtgttttttgcctttttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os07g14270.1 (Oryza sativa), 5'ss of exon 8
CAAATAAAAAACCCCAACTACAAGGGAAAATGGAAGGCACCTATGATTGACAACCCAGgttcttgcatattccacttcaacattttaatttgtttgcagtcttggtgttctttaatgttattttctaatactgatatattttcaacatcttaaatttgtgtgttttttgcctttttag
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AAAATCAAGAACCCTAACTACCAAGGCAAATGGAAGGCACCGATGATCGACAACCCAGgtataattgcctttaa-ttgaacaacttggtat-tacacatttttca-gatgttgaactctgcattctga-actgtttcctttgtggt-tcacag-------------------------
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G074687_T01 (Zea mays), 5'ss of exon 8
CAAATAAAAAACCCCAACTACAAGGGAAAATGGAAGGCACCTATGATTGACAACCCAGgttcttgcatattccacttcaacattttaatttgtttgcagtcttggtgttctttaatgttattttctaatactgatatattttcaacatcttaaatttgtgtgttttttgcctttttag
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AAAATCAAGAACCCTAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgta--tgtttccctgaaattgaaccttgtatcttcttactatttggttattag--aatattagtgctgaacc----tatgtcttatgcttcacag-------------------------
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 8
CAAATAAAAAACCCCAACTACAAGGGAAAATGGAAGGCACCTATGATTGACAACCCAGgttcttgcatattccacttcaacattttaatttgtttgcagtcttggtgttctttaatgttattttctaatactgatatattttcaa--catcttaaatttgtgtgttttttgcctttttag--------------------------------------------------
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AAAATCAAGAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgta--tgtttgcctgaaacggatccttatatcttcttactgtttggctattactacgtccc-ttctcgaatatttgtggctcgctagttcatttttgaactaaaacgcgacaaataaaaaagaaaggagggagtagaatgttagtgctgaatctaattcttgtgcatcacag
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G28890.2 (Glycine max), 5'ss of exon 8
CAAATAAAAAACCCCAACTACAAGGGAAAATGGAAGGCACCTATGATTGACAACCCAGgttc-ttgcatattccacttcaacattttaatttgtttgcagtcttggtgttctttaatgttattttctaatactgatatattttcaacatcttaaatttgtgtgttttttgcctttttag
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AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattatacactcttctacaccgtagtaatatttttataaatt------------attttgcattataagataaatatatt--caacatttgaaaaacatttgtcag------------
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 8
CAAATAAAAAACCCCAACTACAAGGGAAAATGGAAGGCACCTATGATTGACAACCCAGgttc-ttgcatattccacttcaacattttaatttgtttgcagtcttggtgttctttaatgttattttctaatactgatatattttcaacatcttaaatttgtgtgttttttgcctttttag
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AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattatacgcccttctacacagtagtaatatttatgtaa-------attcttttgcactat-----aagataaatatatt--cagcatttgaaaaacatttatcag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110703029|gb|EE079515.1|EE079515EST: AAACCCCAACTACAAGGGAAAATGGAAGGCACCTATGATTGACAACCCAG ATTTCAAGGATGACCCAGA
genomic: AAACCCCAACTACAAGGGAAAATGGAAGGCACCTATGATTGACAACCCAGgttcttgcat ... gcctttttagATTTCAAGGATGACCCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAATAAAAAACCCCAACTACAAGGGAAAATGGAAGGCACCTATGATTGACAACCCAGgttcttgcatattccacttcaacattttaatttgtttgcagtcttggtgttctttaatgttattttctaatactgatatattttcaacatcttaaatttgtgtgttttttgcctttttag
- - - - - - - - - - - - - - - TGGAAG