Sequence
atgc intronic sequence ATGC exonic sequenceCCTTTTGAACCTGTTGTCACATAATTACAAGAAAAGCATCAAGAAGGAGGCTTGCTGGACCATCTCAAACATCACAGCTGGAAATAAAGATCAGATACAGgtgagcagtagattcatctgtggcaaacaaactgtgcttcatgattttaaggatataaggcttcttgattcttatttgccgcccttattttgctgattgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 8
CCTTTTGAACCTGTTGTCACATAATTACAAGAAAAGCATCAAGAAGGAGGCTTGCTGGACCATCTCAAACATCACAGCTGGAAATAAAGATCAGATACAGgtgagca-gtagattcatctgtggcaaacaaactgtgcttcatgattttaagg-atataaggcttct-tgattcttattt-gccgcccttattttgctgattgt
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CCTCCTAAGTCTGTTGACACAAAATCTCAAGAAAAGCATCAAGAAAGAGGCTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtacagacttaaaaaatactgacatgct---catcattctactaagtcatgaaggatttgtgtagtgcatacttagtagttttaattgtgttccctc-
upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 8
CCTTTTGAACCTGTTGTCACATAATTACAAGAAAAGCATCAAGAAGGAGGCTTGCTGGACCATCTCAAACATCACAGCTGGAAATAAAGATCAGATACAGgtgagcagtagattcatctgtggcaaacaaactgtgcttcatgattttaaggatataaggcttcttgattcttatttgccgcccttattttgctgattgt-------
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CCTCCTGAATCTGTTGACGCAGAACCACAAGAAAAGCATTAAGAAAGAGGCATGCTGGACTATTTCAAATATTACTGCTGGAAACAAAGATCAGATACAGgtaacatacagaaagtcctatgccacatttctactaatttgt--ttttacagttactaagtggatgacatcaaatttttc-----tagtccagtggttatgatgcaa
upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 7
CCTTTTGAACCTGTTGTCACATAATTACAAGAAAAGCATCAAGAAGGAGGCTTGCTGGACCATCTCAAACATCACAGCTGGAAATAAAGATCAGATACAGgtga-gcagtagattcatctgtggcaaacaaactgtgcttcatgattttaaggatataaggcttcttgattcttatttgccgcccttattttgc---tgattgt
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CCTCCTGAATTTATTGACACAGAACCACAAGAAAAGCATTAAGAAAGAGGCATGCTGGACGATTTCAAATATTACTGCTGGAAACAAAGATCAGATACAGgtaacatacttgaagt-cctatgccatg-aatttgtatttacagttactaagtggat--ggcatcaaatttctctggtgcaatggttatgttgcaaatgagtgt
upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G02150.1 (Arabidopsis thaliana), 5'ss of exon 8
CCTTTTGAACCTGTTGTCACATAATTACAAGAAAAGCATCAAGAAGGAGGCTTGCTGGACCATCTCAAACATCACAGCTGGAAATAAAGATCAGATACAGgtgagcagtagat-tcatctgtggcaaacaaactgtgcttcatgattttaaggatataaggcttcttgattcttatttgccgcccttattttgctgattgt
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TCTTTTGAACCTTCTAAAAAACAATTACAAGAAGAGTATCAAGAAGGAAGCTTGCTGGACTATCTCCAACATTACAGCTGGAAATGCAGATCAGATACAAgtgagttttgtttataatatatggcatttaacaagaaagtcgaaaattgaagtttcctgtgtct---gatt-ttattcga-acccgtatgt-gcag-----
upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G02690.2 (Arabidopsis thaliana), 5'ss of exon 8
CCTTTTGAACCTGTTGTCACATAATTACAAGAAAAGCATCAAGAAGGAGGCTTGCTGGACCATCTCAAACATCACAGCTGGAAATAAAGATCAGATACAGgtgagcagtagat-tcatctgtggcaaacaa------------actgtgcttcatgat--tttaaggatataag--gcttcttgattcttatttgccgcccttat-tttgctgattgt
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TCTGTTAAACCTTTTGAAGAACACATACAAGAAGAGTATCAAGAAGGAAGCTTGCTGGACTATCTCTAACATTACAGCTGGGAACACAAGTCAAATTCAAgtgagttatatacattattaacaaataacaatgttcaaaaaccaatatcttttcttataatttaaaaccagaagtcgtatatacatttggatttaacatcgataaatttgttgtgcag
upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S63_171V6.1 (Physcomitrella patens), 5'ss of exon 8
-CCTTTTGAACCTGTTGTCACATAATTACAAGAAAAGCATCAAGAAGGAGGCTTGCTGGACCATCTCAAACATCACAGCTGGAAATAAAGATCAGATACAGgt--gagcagtagattcatctgtg------------gcaaacaaactgtgcttcatgattttaaggatataaggcttcttga-ttcttatttgccgcccttattttgctgattgt--------------------------
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TCTGCTCGCACTACTCACCA-ACAACCACAAGAAGAGTATCAAAAAGGAAGCATGCTGGACCATTTCCAACATCACAGCCGGAAACAAGGAACAAATTCAGgttggattcgaatcttcatctgcccatgcctcgactacgagctaaatgcacagcacacccttctgtctgtggagcaataggagttttcagaaagtaatctctggtatcagatgttaacaaatttgttcgggaaatttgcag
upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S43_141V6.1 (Physcomitrella patens), 5'ss of exon 9
-CCTTTTGAACCTGTTGTCACATAATTACAAGAAAAGCATCAAGAAGGAGGCTTGCTGGACCATCTCAAACATCACAGCTGGAAATAAAGATCAGATACAGgtgagcagtagattcatctgtggcaaacaaactgtgcttcatgattttaaggatataaggc--ttcttgattcttatttgccgcc-cttattttgctgattgt---------
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TCTTCTCGCTCTTCTCACCA-ACAACCACAAGAAAAGCATTAAAAAGGAAGCCTGCTGGACTATCTCCAACATCACTGCTGGAAACAAGGATCAGATTATGgtacgaactcaaaatctgttctatgatcaaactttggttta-gatttggttggtcccaatcaatccttaactgagtggtaatgttactgatgtcgtggattattttctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110397066|gb|EC962784.1|EC962784EST: CTTGCTGGACCATCTCAAACATCACAGCTGGAAATAAAGATCAGATACAG TCTGTAATTGAGGCTGGCATCATTCCTCCCCTTATCTATCTGCTTCAAAAT
genomic: CTTGCTGGACCATCTCAAACATCACAGCTGGAAATAAAGATCAGATACAGgtgagcagta ... aaatatgcagTCTGTAATTGAGGCTGGCATCATTCCTCCCCTTATCTATCTGCTTCAAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTTTTGAACCTGTTGTCACATAATTACAAGAAAAGCATCAAGAAGGAGGCTTGCTGGACCATCTCAAACATCACAGCTGGAAATAAAGATCAGATACAGgtgagcagtagattcatctgtggcaaacaaactgtgcttcatgattttaaggatataaggcttcttgattcttatttgccgcccttattttgctgattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggata