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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatctctttgtgtcttgtttctcccattccactacttgctaatttatattacccatggattttgtctgcatatcatgatggttttgattgtcatcggttatgagatgaaagtctaactgactcgtgatttgcccttgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g00320.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110684800|gb|EE062491.1|EE062491
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
EST: gi|110728249|gb|EE103650.1|EE103650
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
EST: gi|161720073|gb|FC066729.1|FC066729
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGAAATGCATTTAGTCGGGCATAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
EST: gi|71876345|gb|DT025400.1|DT025400
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGAAATGCATTTAGTCGGGCATAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
EST: gi|351031962|gb|FQ460219.1|FQ460219
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
EST: gi|351048120|gb|FQ442090.1|FQ442090
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGAAATGCATTTAGTCGGGCATAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
EST: gi|351017085|gb|FQ424512.1|FQ424512
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
EST: gi|161716478|gb|FC065201.1|FC065201
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
EST: gi|161720061|gb|FC065449.1|FC065449
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
EST: gi|110688099|gb|EE066267.1|EE066267
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
EST: gi|351025780|gb|FQ427792.1|FQ427792
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
EST: gi|71856812|gb|DT005867.1|DT005867
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCACAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
EST: gi|349807898|gb|FQ402289.1|FQ402289
EST:     GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCA                         ATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT
genomic: GTACAGTGGGGATTGTGGATTACACAAACTACGATGACATGAAATTTGCAgtgagttatc ... gcccttgcagATCAGGAAACTTGATGATTCTGAGTTTCGGAATGCATTTAGTCGGGCATAT