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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAAGGGCATTGGGCGTGGCCTAGATGATGGAGGTGCTAGAGGCATGGGTGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttttccattcccatcattacaaaatatatatatatatatataagtaaataaataaacgaagttttgagaatgtgaagcttattatatgaaaag...

Basic information

species Vitis vinifera
transcript Vv07s0005g00230.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349828814|gb|FQ419147.1|FQ419147
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: gi|349819985|gb|FQ404707.1|FQ404707
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: gi|349819983|gb|FQ404705.1|FQ404705
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: gi|110372194|gb|EC936345.1|EC936345
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGT
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGT
EST: gi|110383606|gb|EC947989.1|EC947989
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGT
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGT
EST: gi|349827595|gb|FQ422463.1|FQ422463
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: gi|351029470|gb|FQ436864.1|FQ436864
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: gi|110692708|gb|EE068197.1|EE068197
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGGCGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: gi|351012236|gb|FQ426958.1|FQ426958
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGT
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGT
EST: gi|351044635|gb|FQ443166.1|FQ443166
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGCAAAGACAGGTGGAAGTAGAG                         GTGGGAGGACGAGGACTATGTTGATACAAGTTTCTGAT
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGG-AGGACGAGGACGAGGTTGATACAAGTTTCTGAT
EST: gi|351025082|gb|FQ433499.1|FQ433499
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: gi|349828184|gb|FQ415512.1|FQ415512
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: gi|351056955|gb|FQ443582.1|FQ443582
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGT
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGT
EST: gi|110374587|gb|EC939452.1|EC939452
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGGCGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: gi|351038850|gb|FQ448493.1|FQ448493
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: gi|110372487|gb|EC936658.1|EC936658
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGGCGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: gi|352790730|gb|FQ478278.1|FQ478278
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: gi|349828185|gb|FQ415513.1|FQ415513
EST:     TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG                         GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGAAGGGCATTGGGCGTGGCCTAGATGATGGAGGTGCTAGAGGCATGGGTGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttttccattcccatcattacaaaatatatatatatatatataagtaaataaataaacgaagttttgagaatgtgaagcttattatatgaaaag

- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa