Sequence
atgc intronic sequence ATGC exonic sequenceGTGATTGGGCAATTCAATCTTGGTTTTATCATTGGAAAGTTAGATCAAGATCTATTTATTGTGGATCAGgtaatttccctccatgcttctgaacttctatttctcaattctacatttagtggaacatttatgttctaatggcaaatgtagtaggcaccttggagcgaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g37920.1 (Oryza sativa), 5'ss of exon 6
GTGATTGGGCAATTCAATCTTGGTTTTATCATTGGAAAGTTAGATCAAGATCTATTTATTGTGGATCAGgtaatttccctccatgcttctgaacttctatttctcaattctaca-tttagtggaa---catttatgttctaatggcaaatgtagtaggcaccttggagcgaaa--------------------------------
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GTTGTTGGGCAGTTTAATCTTGGTTTTATCATTGGAAAGCTGGACCAGGACCTATTTATTGTTGATCAGgta-tctctctatagtctatacatattctattaattgatgtcatagtattgtataaacccctggatatctgggttgcaccttcaagataccttatgtagtcatgtctggtgattaatgtttttttcttcttactag
upper sequence: Vv07s0005g00220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G02390.1 (Glycine max), 5'ss of exon 7
GTGATTGGGCAATTCAATCTTGGTTTTATCATTGGAAAGTTAGATCAAGATCTATTTATTGTGGATCAGgtaatttcc---ctccatgcttctgaa----------cttctatttctcaattctacatttagtgga-acatttatgttctaatggcaaatgtagtaggcaccttggagcgaaa------------
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GTGATTGGGCAATTCAATCTTGGATTTATCATTTGTAAATTGGATCAAGATTTATTCATTGTGGATCAGgtaatttccaatatactaactattgaatacgtggtttcttccaccattcccttgaatgattaattcacatagatgcatccttttgctaaatttaattgtttctttt-accaaaatttaattttcag
upper sequence: Vv07s0005g00220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G17420.1 (Glycine max), 5'ss of exon 7
GTGATTGGGCAATTCAATCTTGGTTTTATCATTGGAAAGTTAGATCAAGATCTATTTATTGTGGATCAGgtaatttccctccatgcttctgaacttctatttctcaattctacatttagtggaacatttatgttctaatggcaaatgta-gtag--gcaccttggagcgaaa-----------------------------------------------
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GTGATTGGGCAATTCAATCTTGGATTTATCATTTGTAAATTGGATCAAGATTTATTCATTGTGGACCAGgtaatttccaat-atacttttgga-----actattgaatatgaagtttcttccaccattccc-ttggaatgattaattcacatagatgcatccttttgctaaatttaattgtttcttttaccaaaacacaatttgtatgaccattttcag
upper sequence: Vv07s0005g00220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G02460.1 (Arabidopsis thaliana), 5'ss of exon 6
GTGATTGGGCAATTCAATCTTGGTTTTATCATTGGAAAGTTAGATCAAGATCTATTTATTGTGGATCAGgtaatttccc-----tccatgcttctgaacttctatttctcaattctacatttagtggaacatttatgttctaatggcaaatgtag----taggcaccttggagcgaaa--------------------------------------------------------
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GTACTCGGGCAATTCAATCTTGGGTTCATCATTGCAAAATTGGAGCGAGATCTGTTCATTGTGGATCAGgtgagtcttcatatatgcatgcttccagagcccttttttcctccttcg-atttgtttagttattggttgagttgtggaaaatggaagtttctatcatttcagagttcttccctagtctgatttttgaagaaatggtatagactagtgattgaattttatggccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110422541|gb|EC988867.1|EC988867EST: TTGGTTTTATCATTGGAAAGTTAGATCAAGATCTATTTATTGTGGATCAG CATGCTGCAGATGAAAAATACAATTTTGAGCATCTGGCACAATCAACTGTC
genomic: TTGGTTTTATCATTGGAAAGTTAGATCAAGATCTATTTATTGTGGATCAGgtaatttccc ... ctcttttcagCATGCTGCAGATGAAAAATACAATTTTGAGCATCTGGCACAATCAACTGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATTGGGCAATTCAATCTTGGTTTTATCATTGGAAAGTTAGATCAAGATCTATTTATTGTGGATCAGgtaatttccctccatgcttctgaacttctatttctcaattctacatttagtggaacatttatgttctaatggcaaatgtagtaggcaccttggagcgaaa
- - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagcgaa