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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGTgtaagctttcttgatattttgcgcacttccttgcgtggttgtacttcatatactcgtactatttctagttttgaccatagaagtaattgcttgtgaggaaatttcatctttgtctgccacttgctaataatttcag

Basic information

species Vitis vinifera
transcript Vv07s0005g00200.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 9
GTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGTgtaagctttcttgatattttgcgcacttccttgcgtggttgtacttcatat-actcgtactatttctagttttgaccatagaagtaattgcttgtgaggaaatttcatctttgtctgccacttgctaataatttcag
|||| || || || |||||||| |||| |||||||||||| ||||||||   ||| || || ||| |||||||||| ||| | |||||||| ||||| | ||    ||  ||| ||       | | ||||   | ||  ||| | |   |  |    |   |||                                                                
GTTCGGAGATTTATCAGGAAACATTGATAAAGGCACTTGCAAAACATTTCGGTGCTAGGCTACTTGTTGTTGATTCGCTTTTGTTGCCTGGGgtaagttatccatgtaacttgtgcttaaaactacttggtgtcaattattattattgagagcaaaattctctttag--------------------------------------------------------------

upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G126453_T01 (Zea mays), 5'ss of exon 4
GTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGTgtaagctttcttgatattttgcgcacttccttgcgtggttgtacttcatatactcgtactatttctagttttgaccatagaagtaattgcttgt-gaggaaatttcatctttgtctgccacttgctaataatttcag----
|||| || || || |||||||| |||  |||||||||||| |||||||||| ||| ||||| ||| | || ||||| ||| |  ||||||| |||||||        ||  ||   | ||  || |       | ||  |||          || | |||     | |  |||| |  ||  |  | |   |    | ||| || ||||  |||    || || | ||     
GTTCCGAGATTTATCAGGAAACATTGGTAAAGGCACTTGCCAAACATTTTAGTGCTAGACTCCTTGTGGTGGATTCACTTTTGCTGCCTGGGgtaagctc-------atcatgtatatttatttac-------tgctaaata----------atatttag----aatctaagaaatctttaatcattgcatatccattatcattttctgatactgaacaagaaatccatgtag

upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G02410.1 (Glycine max), 5'ss of exon 5
GTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGTgtaagctttctt-gatattttgcgcacttccttgcgtggttgtacttcatatactcgtactatttctagttttgaccatagaagtaattgcttgtgaggaaatttcatctttgtctgccacttgctaataatttcag
|||| |||||||||||||| |||||| | ||||||||||  || ||||||  ||||||||| || ||||| |||||||||  | ||||||||||| | |||||| |||||| |||    ||  || |    || ||          | | |  |||| |  ||   |   ||     ||||  ||||      |  || |   ||                        
GTTCAGAAATATACCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGACTACTAATTGTGGATTCTCTTTCACTGCCTGGTgtatgttttcttagatattctgc---ttttgttaca--attata----gaggttttgcagaatttttccttactagtcta-----aattctttgttgcttcacatctttcctgg-----------------------

upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G17400.1 (Glycine max), 5'ss of exon 5
GTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGTgtaagctttctt-gatattttgcgcacttc----cttgcgtggttgtacttcatatactcgtactatttctagttttgaccatagaagtaattgcttgtgaggaaatt------tcatctttgtctgccacttgctaataatttcag----------------------------------------------------
|||| |||||||| ||||| |||||| | ||||||||||  || ||||||  |||||| || || ||||| |||||||||  | ||||||||||| | |||||| |||||| |||     |      |   | |||| |     || |   | ||||| ||||  || |  |   |||  |   |     |   || |||      |    | |||       ||| |  ||| ||  |                                                    
GTTCGGAAATATATCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGGCTACTAATTGTGGATTCTCTTTCACTGCCTGGTgtatgttttcttagatattctgcttttgttacaattatagaggttttgtagaatttttccttactagttct--ttgttgcttcagatctttcttggcatagtgacattgtttgcttgcttctgtagattgtttgttgctaaattaggatttaggattaatatacacacagttgttctcattgtgcaattggtttttcag

upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 4
GTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGTgtaagctttctt-gatattttgcgcacttccttgcgtggttgta----cttcatatactcgtactatt--tctagttttgaccatagaagtaattgcttgtgaggaaatttcatctttgtctgcca------cttgctaataatttcag--------------------------------------------
|||| |||||||| ||||| ||||||   ||||||||||| || ||||||  |||||| || || ||||| ||||||||   ||||||||||||| | ||| || |||||| |    | ||  ||   ||||| ||     ||   | | | |   || |  ||||  ||    |||     |  |   |||   |||   ||   ||   ||||          ||  |  ||| |   |                                            
GTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCAAAGCATTTTGGTGCCAGGCTACTGATTGTCGATTCTCTCTCATTGCCTGGTgtatgtttttttagatattct---tatttttttttatggttatagaggttttgcagaattgccttactagtctaaattgtttcatgttcatggtc-tttgctgggattgtttgcctgcttctgttgagatggtttcttgctaaatcaggaatagtatacactcaattgttcttaactgtgccattgtttttag