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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAAGATACCTGGACCATTTGATTGTGGAAAGGAAATATGCTGAAGCTGCATCTTTGTGTCCTAAATTGTTGCGTGGATCTGCTTCAGCATGGGAAAGgtaccaaataactttagttatatcctttttttaaagttactgattagtaactggctgtgggtttctcaccag

Basic information

species Vitis vinifera
transcript Vv06s0061g00940.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os04g11880.1 (Oryza sativa), 5'ss of exon 8
GATCAAGATACCTGGACCATTTGATTGTGGAAAGGAAATATGCTGAAGCTGCATCTTTGTGTCCTAAATTGTTGCGTGGATCTGCTTCAGCATGGGAAAGgtaccaaa-----------taactttagttatatcctttttttaaagttactgattagtaactgg----ctgtgggtttctcaccag-------------------------------------------------------------
| || |||||||| || ||||||||  | ||||| ||||||||||||||||||    | ||||| ||||||||||| |||||| ||||||||||||| ||||   |||           | |  |   || |||||||  |   | | |   ||  |   || ||     | || | || | |   |                                                             
GTTCGAGATACCTTGATCATTTGATAATTGAAAGAAAATATGCTGAAGCTGCACGCCTCTGTCCAAAATTGTTGCGAGGATCTCCTTCAGCATGGGAGAGgtgagaaaaaaagaagtgttgatatacattgtatccttcatcatacgatctggaacaaacacaggagcattatgagattttgatgtgcattgtttgttttagttgatcactagtatatctactgaccataactttttttgtgccacag

upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G19660.2 (Glycine max), 5'ss of exon 8
GATCAAGATACCTGGACCATTTGATTGTGGAAAGGAAATATGCTGAAGCTGCATCTTTGTGTCCTAAATTGTTGCGTGGATCTGCTTCAGCATGGGAAAGgtaccaaataactttagttatatcctttttttaaagttactgattagtaactggctgt-----gggtt--tctcaccag
|||| || ||||| || ||| ||||||||||||| |||||   |||||| |||||||||||||| || ||| | || ||||| |||||||||||||| ||||||   ||  | ||| ||||     | || || |||| |||||| |||| ||| |||     ||  |  | ||| |||
GATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAAGCAGCATCTTTGTGTCCCAAGTTGCTTCGAGGATCAGCTTCAGCATGGGAGAGgtacggcatgccattatttattagtctgttatagagtt-ctgatttgtaattgggtgttcaatggactgctttcaacag

upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 8
GATCAAGATACCTGGACCATTTGATTGTGGAAAGGAAATATGCTGAAGCTGCATCTTTGTGTCCTAAATTGTTGCGTGGATCTGCTTCAGCATGGGAAAGgtaccaaataactttagttatatcctttttttaaagttactgattagtaactggct-----gtgggtt--tctcaccag
|||| || ||||| || ||||||||||||||||| |||||    ||||| |||||||||||||| || ||| | || ||||| |||||||||||||| |||||    ||  | ||| ||||     | ||    |||| |||||| |||| ||| |     ||||  |  | ||| |||
GATCTAGGTACCTTGATCATTTGATTGTGGAAAGAAAATACAGGGAAGCAGCATCTTTGTGTCCCAAGTTGCTTCGAGGATCAGCTTCAGCATGGGAGAGgtatggcatgccattatttattagtctgttaatgagtt-ctgatttgtaaatgggtgttcagtggactgctttcaacag

upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 8
GATCAAGATACCTGGACCATTTGATTGTGGAAAGGAAATATGCTGAAGCTGCATCTTTGTGTCCTAAATTGTTGCGTGGATCTGCTTCAGCATGGGAAAGgtaccaaataactttagttatatcctttttttaaagttactgattag--taactggctgtgggtttctcaccag--------------
|| |  | || || || ||||||||||||||||| |||||||||||||| |||||||| || || |||||||| || |||||||||||||| ||||| ||||    || || |||   ||| || | |||  |||||   || || |  |   | |   |   | |  || ||               
GAGCTGGGTATCTTGATCATTTGATTGTGGAAAGAAAATATGCTGAAGCGGCATCTTTATGCCCCAAATTGTTACGAGGATCTGCTTCAGCCTGGGAGAGgt-ttgaacaaatttg--tatctcttctttgcaaagtgtttgttttggttgttttgtactttatctaacatcatgtgtctcttttcag