Sequence
atgc intronic sequence ATGC exonic sequenceTCATGAGATCCTTGGAGTACCTACTGTCAGTGCTCGATTTGGAACTGCACCATTCTTCTGGAATTGGGGAATGGAAGCTATGACAAATCTTCTTCCTGTGgtaaaagctcttacatgaaaccatgttattgatttttcaatcatcaagttacttattgatgtttctgcccacatatggtttgaattaccaatattaacct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00080.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os11g04490.1 (Oryza sativa), 5'ss of exon 8
------------------------TCATGAGATCCTTGGAGTACCTACTGTCAGTGCTCGATTTGGAACTGCACCATTCTTCTGGAATTGGGGAATGGAAGCTATGACAAATCTTCTTCCTGTGgtaaaagctcttacatgaaaccatgttattgatttttcaatcatcaagttacttattgatgtttctgcccacatatggtttgaattaccaatattaacct
| || || | | || || ||||||||||||||||| || || ||||| || || ||||||||||||| |||| | || | |||| || | ||||| ||| |||||| || | | || | | |||||||||||| || || | | | || | |
GAATTTGCCTGAGGTGAAGAGTGCTTATAAGGTTTTAGGTGTGCCTACTGTCAGTGCTCGCTTCGGTACTGCTCCTTTTTTCTGGAATTGGgtaatgcaggccttcgcaaactttttacctgttgtatg---tcttac-----------ttctcaaattatgcactatcaagttacttctt-----------tcagacacaaccggtgctattagt--------
upper sequence: Vv06s0061g00080.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os12g04260.1 (Oryza sativa), 5'ss of exon 8
TCATGAGATCCTTGGAGTACCTACTGTCAGTGCTCGATTTGGAACTGCACCATTCTTCTGGAATTGGGGAATGGAAGCTATGACAAATCTTCTTCCTGTGgtaaaagctcttacatgaaaccatgt--tattgatttttcaatcatcaagttacttattgatgtttctgcccacata-tggtttgaattaccaatattaacct
| || || | | || || |||||||| |||||||| || || ||||| || || |||||||||||||||||| | || | |||| || | ||||| ||| | | | | ||| ||| ||| |||| | | | || | || | | || | || ||| || | ||
TTATAAGGTTTTAGGTGTGCCTACTGTTAGTGCTCGCTTCGGTACTGCTCCTTTTTTCTGGAATTGGGGAATGCAGGCCTTCGCAAACTTTTTACCTGTTgtatgtcttacttc-tcaaattatgcactatcaatttacttctttcagacacaaccggtgctattagtattctagtactagtaaactctactaaaaaaaat--
upper sequence: Vv06s0061g00080.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G123652_T01 (Zea mays), 5'ss of exon 8
TCATGAGATCCTTGGAGTACCTACTGTCAGTGCTCGATTTGGAACTGCACCATTCTTCTGGAATTGGGGAATGGAAGCTATGACAAATCTTCTTCCTGTGgtaaaagctcttacatgaaaccatg--ttattgatttttcaatcatca-agttacttattgatgtttctgcccacatatggtttgaattaccaatattaacct
| |||| | || || || ||||| |||||||||||||| ||||| || ||||||||||||||||||||| | ||| | |||| || | ||||| ||| | || | | | | ||| |||| | || | || | || | || | ||| || | || | | | | | ||| | || |
TTTCAAGATATTAGGTGTGCCAACTGTTAGTGCTCGATTTGGTACTGCTCCTTTCTTCTGGAATTGGGGAATGCAGGCTTTCGCAAACTTTTTACCTGTTgtatgtatttttcc-tcagattatgctttatacaaagttaattcgtttcagccccatagttatggttgctattattgatactgt-agtaattaat-taaattt
upper sequence: Vv06s0061g00080.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G02430.1 (Glycine max), 5'ss of exon 8
TCATGAGATCCTTGGAGTACCTACTGTCAGTGCTCGATTTGGAACTGCACCATTCTTCTGGAATTGGGGAATGGAAGCTATGACAAATCTTCTTCCTGTGgtaaaagctc---ttacatgaa---accatgttattgattttt-caatcatcaa-gttacttattgatgt-ttctgcccacatatggtttgaattaccaa--tattaacct------------------------------------------------------------------------
||||||||| || ||||| || | ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| || | || || | || ||| ||| | |||| || || || | | |||| | | | | || || | || | ||
TCATGAGATTCTAGGAGTGCCAAGTGTAAGTGCTCGATTTGGAACAGCACCATTTTTCTGGAATTGGGGAATGGAAGCTATGACAAAACTTCTTCCTTCGgtatgctcttgaatcacttggattgacttggttgcagataagtgcaattgctaacaatatgcatgaaaatattctatcaatacaatattgcttttgataggctactcactctattatgaaacggtactacaaaattttgatgcatcatataacaagtgttttgacttgtgattaaacatgcag
upper sequence: Vv06s0061g00080.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G10110.2 (Glycine max), 5'ss of exon 8
TCATGAGATCCTTGGAGTACCTACTGTCAGTGCTCGATTTGGAACTGCACCATTCTTCTGGAATTGGGGAATGGAAGCTATGACAAATCTTCTTCCTGTGgtaaaagctc---ttacatgaa---accatgttattgattt-ttcaatcatcaa-gttacttattgatgt-ttctgcccacatatggtt-------tgaattac-caatattaacct-----------------------------------------------------------------------
|||| |||| || ||||| || | ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| || | || || | || ||| ||| | |||| || | || | | |||| | | | | || | | ||| || || | ||
TCATAAGATTCTAGGAGTGCCAAGTGTAAGTGCTCGATTTGGAACATCACCATTTTTCTGGAATTGGGGAATGGAAGCTATGACAAAACTTCTTCCTTCGgtatgctcttgaatcacttggattgacttggttgcagataagtgcaattgctaacaacatgcatgaaaatattctatcaatacaatattgctttcatagactactcagtacttactctattatgaaatggtactgcaaattttgatgcatcatataacaagtattttcacttgtgattgaacttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161712106|gb|FC061478.1|FC061478EST: CATTCTTCTGGAATTGGGGAATGGAAGCTATGACAAATCTTCTTCCTGTG GAATTTCTGAGAGATAGGAGCAAAGTCCAAGAATTGGTTCAATTGTTTGAC
genomic: CATTCTTCTGGAATTGGGGAATGGAAGCTATGACAAATCTTCTTCCTGTGgtaaaagctc ... aatcttgcagGAATTTCTGAGAGATAGGAGCAAAGTCCAAGAATTGGTTCAATTGTTTGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCATGAGATCCTTGGAGTACCTACTGTCAGTGCTCGATTTGGAACTGCACCATTCTTCTGGAATTGGGGAATGGAAGCTATGACAAATCTTCTTCCTGTGgtaaaagctcttacatgaaaccatgttattgatttttcaatcatcaagttacttattgatgtttctgcccacatatggtttgaattaccaatattaacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacca