Sequence
atgc intronic sequence ATGC exonic sequenceGTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaattacaatgttaaaatattatatttccttctctgcttttatattcctaagttttggttaattacaactcaaattcaatttttaatatttca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00770.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os10g04860.1 (Oryza sativa), 5'ss of exon 8
GTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaattacaatgttaaaatattatatttccttctctgcttttatattcctaagttttggttaattacaactcaaattca---atttttaatatttca
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GTGGAAGTCGATGTGCTGACAGGGGCAACCACCATCCTGAGGAGCGACCTCGTGTATGACTGTGGGCAGAGCCTGAATCCTGCTGTCGACTTAGGCCAGgtcagtcagtcactcaatctttttttttagattttgttttatttagatagatgattacatcctggcct-ctgcatctgtgatacatacagccataaagttt--
upper sequence: Vv06s0009g00770.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G044469_T02 (Zea mays), 5'ss of exon 2
GTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaattacaatgttaaaatatt---atatttccttctctgcttttatattcctaagttttggttaattacaactcaaattcaatttttaatatttca-
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GTAGAGATTGATCTTCTCACTGGAGCCTCCACAATTGTTCGAAGTGATCTTATATATGACTGTGGCCAGAGCTTAAACCCTGCTGTGGACTTGGGACAGgtgggttttatctgattggttgtatttgtcagtgttattaaaactacgtttaaacgtcaagac----actaattataggttgaaaccgcgctttggcgttctaa
upper sequence: Vv06s0009g00770.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM5G872934_T01 (Zea mays), 5'ss of exon 3
GTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaattacaatgttaaaatattatatttccttctctgcttttatattcc-taagttttggttaattacaactcaaattcaatttttaatatttca---
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GTGGAGATTGATCTTCTTACGGGAGCAATCACTATAATAAGGGGCGATCTTGTGTACGACTGTGGGAAGAGCTTGAACCCTGCAGTGGACTTAGGACAGgtttgc----tgtcgatccttttatgcttcatgccttaaccaattttaattctgaatgtagttcgttcattgatttatagagtatataccatggttttggactg
upper sequence: Vv06s0009g00770.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G04950.1 (Glycine max), 5'ss of exon 8
GTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaattacaatgttaaaatattatatttccttctctgcttttatattcctaagttttggtt-aattacaactcaaatt----caatttttaatatttca
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GTGGAAATAGATCTTCTGAATGGAGAAACCAGATTTTTGCAAACAGATATTATTTACGATTGTGGACAGAGTCTAAACCCTGCTGTGGATTTAGGACAGgtaagct-aactacatattttcaatgcaagctcagccctaaccaaggaataacacaagaattgggtccaaaaatagctttaattaacacaacttctcacat----
upper sequence: Vv06s0009g00770.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G44000.3 (Glycine max), 5'ss of exon 8
GTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcc--caattacaatgttaaaatattatatttccttctctgcttttatattcctaagttttggttaattacaactcaaattcaatt-tttaatatttca
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GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgtaagctaatatatatgtgggtgaaattataaatctgaaagactgaaactatttaactatacatgag---atcaagaataaaagttaatagtacattactatt
upper sequence: Vv06s0009g00770.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G44000.2 (Glycine max), 5'ss of exon 3
GTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaattacaatgttaaaatattatatttccttctctgcttttatattcctaagttttggtt-aattacaactcaaattcaatttttaatatttca--
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GTGGAAATTGATCTTCTGAATGGAGAAACCAGATTTTTGCAAACAGACATTATTTATGATTGTGGACAGAGTCTAAACCCTGCTGTTGATTTAGGACAGgtaagct-gactacacatttgctatgcaagctcagccctaaccaaagaataacacaagaattgggtccaaaaatagttttttattaacac--aacttctcaca
upper sequence: Vv06s0009g00770.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G20960.2 (Arabidopsis thaliana), 5'ss of exon 8
GTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaattacaatgttaaaatattatatttccttctctgcttttatattcctaagttttggttaattacaactcaaattcaatttttaatatttca
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GTTGAAGTAAACGTTTTGACGGGAGAAACAACGATCCTGCGTACAGATATTATCTATGATTGTGGGAAGAGTCTCAATCCCGCTGTTGATTTAGGACAGgttagagccaggaaaccactcta-tgtgccgttttatgttatattgttctgtttcatgattct--cttattttattttg--ttttgtttacag-------
upper sequence: Vv06s0009g00770.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G04580.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaattacaatg-ttaaaatattatatttccttctctgcttttatattcctaagttttggttaattacaactcaaattcaatttttaatatttca
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GTGGAGGTTGACCTTGTGACAGGAAGAACAGAAATTATAAGATCAGATATTATCTATGACTGTGGAAAAAGCCTTAATCCTGCTGTTGATTTAGGACAGgtaattcgcttgattttggtccggattctggatgtgcacttgatgttctata-----acaggttggttaattggcgtttatgtttgttttctttgagaag-
upper sequence: Vv06s0009g00770.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G27150.2 (Arabidopsis thaliana), 5'ss of exon 8
GTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaattacaatgttaaaatattatatttccttctctgcttttatattcctaagttttggttaattacaactcaaattcaatttttaatatttca
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GTGGAAGTGGACCTTGTGACAGGAAAAACCGAGATTTTAAGATCCGATATTATTTATGACTGTGGAAAGAGTCTTAATCCTGCAGTTGATTTAGGACAGgttagctagcatttagt-taactccacaagtttttcttgttttctttta-gtcattttgttgagctaagcaaaaaaacatggtttgtttttgaaaag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689527|gb|EC940594.1|EC940594EST: TTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAG ATAGAAGGAGCTTTTGTCCAAGGGA
genomic: TTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaa ... tgctttacagATAGAAGGAGCTTTTGTCCAAGGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaattacaatgttaaaatattatatttccttctctgcttttatattcctaagttttggttaattacaactcaaattcaatttttaatatttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattcaa