1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAAATATGATTGTAGTATATGGCGTATTGATGTGGGAATGTCCAGTGGAGTTCTTAATTCAAGACCAGAGgtaaactgaacttcttagtttcccattttgaaaaattttgtgagatccaacaaaacataaccacttaatatcatttcctgaagatcttgatcttttatcc...
species | Vitis vinifera |
transcript | Vv06s0004g07390.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGCGTATTGATGTGGGAATGTCCAGTGGAGTTCTTAATTCAAGACCAGAG GTTCTTGAAATAAGAGACAATACAGCAAGAGTTATAAGGAGCAAAAGAGACEST: gi|32245176|gb|CD710995.1|CD710995
genomic: GGCGTATTGATGTGGGAATGTCCAGTGGAGTTCTTAATTCAAGACCAGAGgtaaactgaa ... ctttcaccagGTTCTTGAAATAAGAGACAATACAGCAAGAGTTATAAGGAGCAAAAGAGAC
EST: GTCCAGTGGAGTTCTTAATTCAAGACCAGAG GTTCTTGAAATAAGAGACAATACAGCAAGAGTTATAAGGAGCAAAAGAGACEST: gi|18458545|gb|BM436823.1|BM436823
genomic: GTCCAGTGGAGTTCTTAATTCAAGACCAGAGgtaaactgaa ... ctttcaccagGTTCTTGAAATAAGAGACAATACAGCAAGAGTTATAAGGAGCAAAAGAGAC
EST: GTCCAGTGGAGTTCTTAATTCAAGACCAGAG GTTCTTGAAATAAGAGACAATACAGCAAGAGTTATAAGGAGCAAAAGAGAC
genomic: GTCCAGTGGAGTTCTTAATTCAAGACCAGAGgtaaactgaa ... ctttcaccagGTTCTTGAAATAAGAGACAATACAGCAAGAGTTATAAGGAGCAAAAGAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAATATGATTGTAGTATATGGCGTATTGATGTGGGAATGTCCAGTGGAGTTCTTAATTCAAGACCAGAGgtaaactgaacttcttagtttcccattttgaaaaattttgtgagatccaacaaaacataaccacttaatatcatttcctgaagatcttgatcttttatcc
- - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa