Sequence
atgc intronic sequence ATGC exonic sequenceTCACACTGTCCTTCCTGAAGCACTTGAGAAATGGTCACAAGTTGTAATGTGGAAGCTTCTTCCACGCCATATGGAAATCATAGAAGAAATTGATAAGCGGgtaaactggctacccatttcttatttctcctatgtctgcatatgttattttaaattatttgattactgaaccacagactttttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g06020.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g63270.1 (Oryza sativa), 5'ss of exon 8
TCACACTGTCCTTCCTGAAGCACTTGAGAAATGGTCACAAGTTGTAATGTGGAAGCTTCTTCCACGCCATATGGAAATCATAGAAGAAATTGATAAGCGGgtaaactggctacccatttcttatttctcctatgtctgcatatgttattttaaattatttgattactgaaccacagactttttgcag
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TCACACTGTTCTTCCTGAAGCCCTTGAGAAATGGTCGCAGATTGTAATGAGGAAATTACTTCCACGACACATGGAAATTATCGAGGAAATTGACAAGCGGgtaagtgccatgtcacatgtatgcatactttttatacactacagttatggtaaaatat--gacacctag--tgcaattggcttgcag
upper sequence: Vv06s0004g06020.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G085577_T01 (Zea mays), 5'ss of exon 8
TCACACTGTCCTTCCTGAAGCACTTGAGAAATGGTCACAAGTTGTAATGTGGAAGCTTCTTCCACGCCATATGGAAATCATAGAAGAAATTGATAAGCGGgtaaactggctacccatttcttatttctcctatgtctgcatatgttattttaaattatttgattactgaaccacagactttttgcag
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TCATACAGTTCTCCCCGAAGCTCTTGAAAAATGGTCACAAATTGTGATGAGGAAATTACTTCCCCGACACATGGAAATTATTGAGGAAATTGACAAGCGGgtgattttcatgccacatt--tactttttctatga--acttcagtcattgcacaa-gctcacaagttgtgccactgg---tttgcag
upper sequence: Vv06s0004g06020.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G07480.1 (Glycine max), 5'ss of exon 8
TCACACTGTCCTTCCTGAAGCACTTGAGAAATGGTCACAAGTTGTAATGTGGAAGCTTCTTCCACGCCATATGGAAATCATAGAAGAAATTGATAAGCGGgtaaactggctac---ccatttcttatttctcctatgtctgcatatgttattttaaattatttgattactgaa-ccacagactttttgcag
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TCATACTGTCCTCCCTGAAGCACTAGAGAAATGGTCTCAACCTGTAATGTGGAAACTGCTTCCACGCCATATGGAAATCATACAAGAAATAGACAAGAGAgtaagttgctcaccttccatgtttcttttttattaactccatgaaagttgtactggtatatttcaatatggaaatcatgaaatgcttgcag
upper sequence: Vv06s0004g06020.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G45210.1 (Glycine max), 5'ss of exon 9
TCACACTGTCCTTCCTGAAGCACTTGAGAAATGGTCACAAGTTGTAATGTGGAAGCTTCTTCCACGCCATATGGAAATCATAGAAGAAATTGATAAGCGGgtaaactggctacc--catttcttatttctcctatgtctgcatatgttattttaaattatttgattactgaa-ccacagactttttgcag
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TCATACTGTCCTCCCTGAAGCACTGGAGAAATGGTCTCAACCTGTAATGTGGAAACTACTTCCACGCCATATGGAAATCATACAAGAAATAGACAAGAGAgtaagttgctcaccttccatgtttctttctattaactccatgaaaggtgtactgatatatttgaatatggaaatcatgaaattcttgcag
upper sequence: Vv06s0004g06020.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G46970.1 (Arabidopsis thaliana), 5'ss of exon 9
TCACACTGTCCTTCCTGAAGCACTTGAGAAATGGTCACAAGTTGTAATGTGGAAGCTTCTTCCACGCCATATGGAAATCATAGAAGAAATTGATAAGCGGgtaaactggctacccatttcttatttctcctatgtctgcatatgttattttaaattatttgattactgaaccacagactttttgcag
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TCACACTGTCCTTCCTGAAGCGTTGGAGAAATGGTCACAATCTTTGATGTGGAAGCTTCTTCCTCGTCATATGGAAATAATAGAAGAGATTGACAAGAGGgtattttgctgatcattctaaggatttgtttttatcatatggtgcaataataaaatatat----accattctgcag-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71864360|gb|DT013415.1|DT013415EST: GGAAGCTTCTTCCACGCCATATGGAAATCATAGAAGAAATTGATAAGCGG TTCATCACTATGATACGCTCCAGTCGAACTGATCTTGAGAGTAAAATTCCC
genomic: GGAAGCTTCTTCCACGCCATATGGAAATCATAGAAGAAATTGATAAGCGGgtaaactggc ... ctttttgcagTTCATCACTATGATACGCTCCAGTCGAACTGATCTTGAGAGTAAAATTCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCACACTGTCCTTCCTGAAGCACTTGAGAAATGGTCACAAGTTGTAATGTGGAAGCTTCTTCCACGCCATATGGAAATCATAGAAGAAATTGATAAGCGGgtaaactggctacccatttcttatttctcctatgtctgcatatgttattttaaattatttgattactgaaccacagactttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA