Sequence
atgc intronic sequence ATGC exonic sequenceCTGATCTTGTCCCGAATTAAGGTTCATCTTAATGCACTGAAGAAATACACTTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGGGgtacctatcctttccctcatattttactttagcatgcatattaaatagtcgctcaggctgcattttttaagaaagaaaacatgtctttgcagttgccttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g62650.2 (Oryza sativa), 5'ss of exon 8
CTGATCTTGTCCCGAATTAAGGTTCATCTTAATGCACTGAAGAAATACACTTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGGGgta--cct------atcctttccctcatattttactttagca--tgcatattaaatagtcg-----ctcaggctgcattttttaagaaagaaaacatgtcttt------gcagttgccttt-------------------
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TTGATCCTGTCACGAGTAAAGGTTCATTTAAGTGCACTGAAGAAATATACATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGgtaagcttttgtggacatcttcactgaaaaattattgaaataattttgtcttgaaaccttggtatttttagcctccctgtgttgtctggttatatttatcctttttaacacagttttcttttttcaaaatttaaatgcag
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G04060.2 (Glycine max), 5'ss of exon 10
CTGATCTTGTCCCGAATTAAGGTTCATCTTAATGCACTGAAGAAATACACTTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGGGgtacctatccttt----------ccctcatatttt----actttagcatgcatattaaatagtcgctcaggctgcatt-----ttttaagaaagaaaacatgt-ctttgcagttgccttt------------------------------------------------------------------
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CTAATTCTTTCACGAATTAAAGTTCATTTGAATGCATTGAAAAAGTACACCTATGGGAAGCATATTGTTGCTCGTGTAGAGAAACTTGTTGCTGCTGGAGgtaattatttcttgcttgcattaccgctacattctctgaatatgtgcatgaataggagatacacacctgaactaccctgccaattatatgcctttagttgcatactttactgtttacttttgatctgctaaggtattacgttacattacgtgtagtttgccaactgggtcatgtaatttgttgcag
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G06430.1 (Glycine max), 5'ss of exon 8
CTGATCTTGTCCCGAATTAAGGTTCATCTTAATGCACTGAAGAAATACACTTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGGGgtacctatcctttccctcatattttactttagcatgcatattaaatagtcgctcaggctgcattttttaagaaagaaaacatgtctttgcagttgccttt-----
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CTGATTCTTTACCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATTGTCGCCCGTGTGGAGAAACTTGTTGCTGCTGGAGgtacttactccttcc---atatcatttcctcatttgcat-tcctccatgctcttttatttcagcatccatgcacgtgcatgtgcactaggagc-actttcatctg
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G14530.1 (Glycine max), 5'ss of exon 9
CTGATCTTGTCCCGAATTAAGGTTCATCTTAATGCACTGAAGAAATACACTTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGGGgtacctatcct--ttccctcatattttactttagcatgcatat-taaatagtcgc-tcaggctgcattttttaagaaagaaaacatgtctttgcagttgccttt
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CTGATTCTGTACAGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAGgtaattactctccttccatgtcattcctaatttgcattctttcacacatttttatatttcaccacccatctgcgcatttggagcacactttcattgatga----
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G06450.3 (Glycine max), 5'ss of exon 8
CTGATCTTGTCCCGAATTAAGGTTCATCTTAATGCACTGAAGAAATACACTTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGGGgtacctatcc--tttccctcatat-tttactttagcatgcatattaaatagtcgctcaggctgcattttttaagaaagaaaacatgtctttgcagttgccttt
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CTGATTCTTTCCCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAGgtacatgttccgtgtcattcctaaatttgtagtctgacacatttttatttttcaccatccatgtgtgcattaggagcaatttcat-tgatagcatgctcct--
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G14500.1 (Glycine max), 5'ss of exon 10
CTGATCTTGTCCCGAATTAAGGTTCATCTTAATGCACTGAAGAAATACACTTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGGGgtacctatcctttccctcatattttactttagcatgcata-ttaaatagtcgctcaggct-gcattttttaagaaagaaaacatgtctt-tgcagttgccttt---------------------------------------------
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CTGATTCTTTCCCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactccttccat-atatcatctcttcatttgcattctcacacgatcttatatttcagcatccgtgcatgtgcacaacacgacatacacacgtgaagaccaagccattctcctgcttctaatatgcacatgtaatttgttgcag
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G14550.1 (Glycine max), 5'ss of exon 11
CTGATCTTGTCCCGAATTAAGGTTCATCTTAATGCACTGAAGAAATACACTTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGGGgtacctatcctttccctcatattttactttagcatgcata-ttaaatagtcgctcaggct-gcattttttaagaaagaaaacatgtctt-tgcagttgccttt---------------------------------------------
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CTGATTCTTTCCCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactccttctat-atatcatctcttcatttgcattctcacacgatcttatatttcagcatccgtgcatgtgcacaacacgacatacacacttgaagaccaagccattctcctgcttctaatatgcacatgtaatttgttgcag
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S96_93V6.1 (Physcomitrella patens), 5'ss of exon 10
CTGATCTTGTCCCGAATTAAGGTTCATCTTAATGCACTGAAGAAATACACTTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGGGgtacctatcctttccctcatattttactttagcatgcatattaaatagtcgctcaggctgcattttttaagaaagaaaacatgtctttgcagttgccttt--
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CTGCTGCTTGGCCGAATTCGTGTGCACTTGCATGCACTGAAGAAGTATACGTATGGCAAGCATATCGTTGCACGTGTTGAAAAGCTGGTTGCTGCCGGGGgtgagttttctgttctagttttcaaaaattgtggtacatagttggc-gttgtttcgcaattagtggtgaagaggttgtagg-atgagtggagctgcgaaatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32458085|gb|CD799259.1|CD799259EST: TTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGGG AAAGGAGAATTGCTATTCAGTCTCCACACCCTGCTTAGGTGGGCATAGGAA
genomic: TTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGGGgtacctatcc ... ttgtttgcagAAAGGAGAATTGCTATTCAGTCTCCACACCCTGCTTAGGTGGGCATAGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGATCTTGTCCCGAATTAAGGTTCATCTTAATGCACTGAAGAAATACACTTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTCGTTGCTGCTGGGGgtacctatcctttccctcatattttactttagcatgcatattaaatagtcgctcaggctgcattttttaagaaagaaaacatgtctttgcagttgccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa