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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttgtgtttttttttttaatcctgaacaaacttcaatgaatatgaagttttaatatgtatgttgtttctttatattttggacag

Basic information

species Vitis vinifera
transcript Vv06s0004g04390.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 14
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaac-ttttgtgtttttttt----tttaatcctga------acaaacttcaatga-atatgaagttttaatatgtatg---ttgtttctttatattttggacag-------------
||||  |||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||| | ||| ||||| || ||||||  ||  | |||   ||    || |||  |        | |  | ||  ||  || |||    |       ||||   || |||||| | | | |  |                
GTGTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCTGAGACGTTGATGTTTGACTATCACAAGCAGCATGGCATTGgtaacacttcatctttcacttaaacttcaatattagtagctcatagtcctctttgttatgtgataactctgggcttatgattttttttcttaacagtgtttatcatctatgtctgtag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G382038_T01 (Zea mays), 5'ss of exon 9
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaac-ttttgtgtttttttt----tttaatcctga------acaaacttcaatga-atatg--aagttttaatatgtatgttgtttctttatattttggacag-------------
||||  |||| || ||||||||||| |||||||| || ||||  ||||||||||| ||||| ||||| ||||| || ||||||  ||  | |||   ||    || |||  |        | |  | ||  ||  || ||  || | |     | |   || |||||| | | | |  |                
GTGTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGATGTTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaacacttcatctttcacttaaacttcaatattagtagctcatagccctctttgttatgtgataactctgggcttatgatttttttcttgacagtatttatcatctatgtctgtag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G177373_T02 (Zea mays), 5'ss of exon 8
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaac-ttttgtgtttttttt----tttaatcctga------acaaacttcaatga-atatg--aagttttaatatgtatgttgtttctttatattttggacag-------------
||||  |||| || ||||||||||| |||||||| || ||||  ||||||||||| ||||| ||||| ||||| || ||||||  ||  | |||   ||    || |||  |        | |  | ||  ||  || ||  || | |     | |   || |||||| |   | |  |                
GTGTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGATGTTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaacacttcatctttcacttaaacttcaatattagtagctcatagccctctttgttatgtgataactctgggcttatgatttttttcttaacggtatttatcatctatgtctgtag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 8
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaac------ttttgtgtttt-----tttttttaatcctgaacaaacttcaatgaatatgaagttttaatatgtatgttgtttct--ttatattttggacag----------
| ||  ||||||| ||||||||||| |||||||| || |||||  ||||||| || ||||| ||||| ||||| || |||||       | |||   ||      |  | |||   |  | |   ||| | ||  |   || | |     | |   ||||        ||||||   |             
GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGTTCGACTATCACAGGCAGCATGGCATTGgtaatacttcatcttgcacttaaactgtaatattagctcatagccctctttattgtgtgataactctaggcttatgatttgtcctcagcaatatttataatctatgtctgtag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 7
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaac-ttttgtgtttttttt----tttaatcctga------acaaacttcaatga-atatgaagttttaatatgtatg-ttgtttctttatattttggacag-------------
||||  |||| || ||||||||||| |||||||| || |||||  ||||||| || ||||| ||||| ||||| || ||||||  ||  | |||   ||    || |||  |        | |  | ||  ||  || |||    |       |||| || ||| || | | | |  |                
GTGTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGTTCGACTATCACAGGCAGCATGGCATTGgtaacacttcatctttcacttaaacttcaatattagtagctcatagccctctttgttatgtgataactctgggcttatgattttttattaacagtatttatcatctatgtctgtag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 8
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttgtgtttttttttttaatcctgaacaaacttcaatgaatatgaagttttaata--tgtatgttgtttctttatattttggacag---------------------------------------------------
| || || || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| || ||   || |||| || ||  |        || | ||    ||   | || |||  ||| | ||||| |||  |||    |  ||                                                   
GAGTTCGTAGTTGCTATGATGAGGGGAAACGTGTGGCTGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGgtaatttctgctcttcttttcttcatagttgttg---ttgattgttgttgttttcttcatagttgtcttttgttccttgttatagctggtagaaaattttcttttgtaagttaactgagttttttatatttctttcaacatag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 8
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttgtgtttttttttt--------taatcctgaacaaacttcaatgaatat--gaagttttaatatgtatgttgt-----ttctttatattttggacag-----
| || || || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| || |    || ||||||        |  ||     |    |   || | |    ||| ||||  | ||||  ||       || | |||||||    ||      
GAGTTCGTAGTTGCTATGATGAGGGGAAACGTGTGGCTGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGgtaatttcttctcttcttttttcttcatagttgtctgttgctccttgttataactggtagaaatttttctctgtaatttaactgagttttctatatttctttcaacatag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 9
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaactt-ttgtgttttttttttt---aatcctgaacaaact-tcaatgaatatgaagttttaatatgtatgttgtttctttatattttggacag----------------------
| || || || ||||||||||||||||| || ||||| ||||| |||||||||||||| |||||||| |||||||| ||||| || |||| || ||||  ||   | | ||   ||   | |  |   ||||  |||    || | | | ||||||||| |    |||    |                      
GAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCCGAGACATTGATGTTTGATTACCATAGGCAGCATGGGATTGgtaatttcttgtcttcttttccttgtaatttcttctcattttgtttacacatatccagtagagatttatct-ttgtttcttaactccttgtggtgtttatgtctcctttcaacatag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G04500.2 (Glycine max), 5'ss of exon 9
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaactt-ttgtgttttttttttta---atcctgaacaaac--ttcaatgaatatgaagttttaatatgtatgttgtttctttatattttggacag----------------------
| || || || ||||||||||||||||| || ||||||||||| |||||||||||||| |||||||| ||||| || ||||| || |||| |||||||  |||    | ||   |      || || | ||||  | |    || | | | |||||| || |    |||    |                      
GAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACATTGATGTTTGATTACCATAGGCAGCATGGAATTGgtaatttattgtctttttttccttataatttcttctcgttttgtttaaggcatatccaatagagatttttct-ttgttttttaactccttgaggtgtttatatatcctttcaacatag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 8
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaact-----tttgtgtttttttttttaatcctgaacaa-acttcaatgaatatgaagttt--taatatgtatgttgtttctttatattttggacag------------------------------------------
| || ||||| || ||||||||||| |||||||| || || |||||||||||||||||||||||||| ||||| || ||||| |     | | | ||||||  |||  ||||   ||| |  ||| ||| |  |         | ||    | |||      | |    |    ||                                          
GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATCGgtaattccttatctttattttttccttttctccttggcaacatctcattgattgagggcacaaacagtacacgttttgcactgctgttaactaataagcaataactcaatgtgatgcttattttcatatttttctctcag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G06980.3 (Glycine max), 5'ss of exon 8
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttgtgtttttttttttaatcctgaacaaacttcaatgaatatgaagttttaatatgtatgttgtttctttatattttggacag----------------------------------------
| || ||||| || ||||||||||| |||||||| || || |||||||||||||||||||||||||| || || || ||||| |  | | | |||| |  |   |   | |  | |     |   |  ||   |  |  | | ||   |  | |||  |  |   ||                                         
GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattcct-tatcttttctccttggcaacatctcattgttgagggcacaaacagtagaagttt-tgcactgccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttgtgtttttttttttaatcctgaacaaacttcaatgaatatgaagttttaatatgtatgttgtttctttatattttggacag--------------------
||||  ||||||| |||||||| || |||||||| |||||||| ||||||||||| || || ||||||||||| || ||||| ||   | || |     |    | | |||   || |    ||| || | |    ||||     ||||  ||||||   ||  |  |                    
GTGTTAGGAGCTGTTATGATGAAGGCAAGCGTGTTGCTGAGACCTTGATGTTTGACTACCACAGGCAACATGGAATTGgtaagttgcattttctcaggctctcgcttcaactttctccctgtaatttgca-tcaacatattctcattgtc-ctttattccttaaattgtttttgtttcttctttgtag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 6
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttgtgtttttttttttaatcctgaacaaacttcaatgaatatgaagttttaatatgtatgttgtttctt-tatattttggacag-----
||||  | ||||| |||||||| || || ||||| || |||||| | ||||||||||| ||||||||||||||||| |||||  ||  |   | ||||   | |       ||||||  ||  |     |   ||      |  ||| || ||| |||  | ||| ||      
GTGTTAGAAGCTGTTATGATGAAGGAAAACGTGTTGCCGAGACTCTTATGTTTGATTACCATAGGCAACATGGGATTGgtaaaattaatcactcttttaccattttcttgaaaactttgatttaagctta---ttggctgattagttattacttctattgtctggccattgtag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 5'ss of exon 8
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaact------tttgtgtttttttttttaatcctgaacaaacttca-atgaatatgaagttttaatatgta-tgttgtttctttatattttggacag--
| ||  | ||||||||||| ||||| |||||||| ||||||||| | |||||||| || |||||||| |||||  | ||||  |       | ||||| | | ||||     | ||||  ||  |      ||||  | |  ||| |||| |           ||||||    | |  
GAGTAAGAAGCTGCTATGACGAGGGAAAGCGTGTTGCTGAGACTCTTATGTTTGACTACCATAGGCAGCATGGCGTTGgtatatacattcctcgtgttgtatcttttctaagttaacacgctctacgcttttatgtcggtccaatgtgtactagaagcgtaaaatatttaaacctggc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33409748|gb|CF215375.1|CF215375
EST:     GCGTGTGGCTGAGACTTTGATGTTTGGTTATCATAGGCAGCATGT-ATAG                         AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG
genomic: GCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttg ... ttttggacagAAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG
EST: gi|33408202|gb|CF213829.1|CF213829
EST:     GCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAGCATGGGATAG                         AAATACGCATTGCTAGAATTTTCAACACATACGGGCCCCGCATGAATATTG
genomic: GCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttg ... ttttggacagAAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG
EST: gi|33407209|gb|CF212836.1|CF212836
EST:     GCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAG                         AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG
genomic: GCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttg ... ttttggacagAAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG
EST: gi|30297461|gb|CB974255.1|CB974255
EST:     GCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAGCATGGGATAG                         AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG
genomic: GCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttg ... ttttggacagAAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG
EST: gi|33407983|gb|CF213610.1|CF213610
EST:     GCGTGTGGCTGAGACTCTGATGTTTGATTATCATAGGCAACGTGGGATAG                         AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG
genomic: GCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttg ... ttttggacagAAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG
EST: gi|56408375|gb|CX016627.1|CX016627
EST:     GCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAGCATGGGATAG                         AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG
genomic: GCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttg ... ttttggacagAAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG
EST: gi|33406260|gb|CF211887.1|CF211887
EST:     GCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAG                         AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG
genomic: GCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttg ... ttttggacagAAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTG