Sequence
atgc intronic sequence ATGC exonic sequenceGTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAGgttgttaatgctttttatatataatcttatgcatggtcagatagatgaatcatatagttattattattagacaattgagtggtaaagagtaaattatgcaacatcttgatgtttttatctttaatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G15520.2 (Glycine max), 5'ss of exon 7
GTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAGgttgtt-aatgctttttatatataatcttatgcatggtcagatagatgaatcatatagttattattattagacaattgagtggtaaagagt-aaattatgcaacatcttgatgtttttatctttaatcag
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ATCAATCAGAAGATGGTGAAATCTGCACTCATAAAGGATCTGTATTCTGAAATTGACAGACTGAAGCAAGgttgtttaatgcttttgtattctaaaagaaaatagcaccatgttaataaactat-------ttttccttttacagttcagtgctggaatgttgaatttttttacgtat-gtggtttgcag----------
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G40580.1 (Glycine max), 5'ss of exon 8
GTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAGgttgttaatgctttttatatataatcttatgcatggtcagatagatgaatcatatagttattattattagacaattgagtggtaaagagtaaattatgcaacatcttgatgtttttatctttaatcag
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ATTAATCAGAAAATGATGAAATCTGCAATGATTAAGGATTTGTATTCTGAAATTGACAGACTAAAGCAAGgttggcgac---tgttccatattaatgta-gttttgtccctttgttttctcccatgaa----gccccgatactccaaaatggccaac-gtatgtcctgatatgtatccg-------------------
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G04830.1 (Glycine max), 5'ss of exon 7
GTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAGgttgttaatgctttttatatataatcttatgcatggtcagatagatgaatcatatagttattattattagacaattgagtggtaaagagtaaatta--tgcaacatcttgatgttttta---tctttaatcag---------------------------------------
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ATTAATCAGAAAATGATGAAATCTGCAATGATTAAGGATTTGTATTCAGAAATTGACAGACTAAAGCAAGgttgttgactgttcccatat-taatgtagtttccgtccctttgttttttcctttgtgctctttttttctctaaatagagagaaaaatagtatgttggttacttctttctcactttctcacactccttgatggttcagtgctgaaatgtagtacttttctatttatgttacag
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G07910.1 (Glycine max), 5'ss of exon 7
GTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAGgttgttaatgctttttatatataatcttatgcatggtcagatagatgaatcatatagttattattattagacaattgagtggtaaagagtaa-attatgc-aacatcttgatgtttttatctttaatcag---------------------------------------
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ATCAATCAAAAGATGGTGAAATCTGCACTCATTAAGGATCTGTATTCTGAAATTGAAAGACTGAAGCAAGgttgttca--ctgtttacatatt-tgtaaaatagtttctgttagtcacttcgcattttccctctttcagttttctctaaacaaagaaaatagcaccatgctaataaactatttttcctttcacagttcagtgctgaaatgttgaatttctttccatgtgtggtttgcag
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G28620.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAGgttgttaatgctttttatatat-aatcttatgcatggtcagatagatgaatcatatagttattattattagacaattgagtggtaaagagtaaattatgcaacatcttgatgtttttatctttaatcag
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GTTAACCAGAAGATGATGAAATCAGCTATTATGAAAGATTTGTATTCTGAAATTGAACGTCTGAAGCAAGgtat---atatttgttacatattgatgatctcctttgcttattaaat-acttatat-gtgaatctcttgggttaactgtctgttcttgactgtatcag-------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690251|gb|EC949944.1|EC949944EST: ATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAG AGGTCTATGCTGCAAGAGAGAAGAATGGTATCTATAT
genomic: ATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAGgttgttaatg ... ctttaatcagAGGTCTATGCTGCAAGAGAGAAGAATGGTATCTATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAGgttgttaatgctttttatatataatcttatgcatggtcagatagatgaatcatatagttattattattagacaattgagtggtaaagagtaaattatgcaacatcttgatgtttttatctttaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG