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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAAGCAGGGGCGTTTTCGTGGGAACTTGTCTGGGAAGCGTGTTGAGTATACTGGCAGGACTGTTATATCGCCTGACCCTAATCTAAAAATTACCGAGgtcagatgctttactaaaagcttcattgatttttgggctgctttgttgtgcctgctgtttatttggaaatcaaatggatctattgtctctag

Basic information

species Vitis vinifera
transcript Vv06s0004g03740.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03740.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G60040.1 (Arabidopsis thaliana), 5'ss of exon 9
AGGGAAGCAGGGGCGTTTTCGTGGGAACTTGTCTGGGAAGCGTGTTGAGTATACTGGCAGGACTGTTATATCGCCTGACCCTAATCTAAAAATTACCGAGgtcagatgctttactaaaagcttcattgat-ttttgggctgctt-tgttgtgcctgctgtttatttggaaatcaaatggatctattgtctctag
||| ||   ||| ||||| ||||  |||||||| ||||||||||| ||||  ||||| || ||||| || || ||||| || ||||| |||||||| ||||| |  | | |||      | || |||| |  |||  | |  || | || |   ||    ||||    ||   || |  |  | |         
AGGAAAAGGGGGACGTTTCCGTGCAAACTTGTCGGGGAAGCGTGTCGAGTTCACTGGTAGAACTGTAATTTCACCTGATCCCAATCTGAAAATTACAGAGgtaacttaccttaagtggtggttaattgttgctttttgttatttatatttttggtgtaacttatcacaaaggtaactaaacttttcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71881653|gb|DT030708.1|DT030708
EST:     ATACTGGCAGGACTGTTATATCGCCTGACCCTAATCTAAAAATTACCGAG                         GTGGCAATCCCCATCCTGATGGCTAAGATCTTAAGTTATCCTGA
genomic: ATACTGGCAGGACTGTTATATCGCCTGACCCTAATCTAAAAATTACCGAGgtcagatgct ... ttgtctctagGTGGCAATCCCCATCCTGATGGCTAAGATCTTAAGTTATCCTGA