1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAGAGCTCACTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAGgtatggcattctacctgtgaaaatgaccaaataacttggaataggatgaaaaaattacctatcttttctaaccattgcagtttttttttttcttttggaa...
species | Vitis vinifera |
transcript | Vv06s0004g02910.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTCC-ATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAG AGGAACTGATATGAGTAGTCCTCATGGCATACCTGTTGACTTGTTAGACCGEST: gi|77579990|gb|DV218875.1|DV218875
genomic: CTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAGgtatggcatt ... cattttgcagAGGAACTGATATGAGTAGTCCTCATGGCATACCTGTTGACTTGTTAGACCG
EST: CTCC-ATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAG AGGAACTGATATGAGTAGTCCTCATGGCATACCTGTTGACTTGTTAGACCGEST: gi|27586915|gb|CB009610.1|CB009610
genomic: CTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAGgtatggcatt ... cattttgcagAGGAACTGATATGAGTAGTCCTCATGGCATACCTGTTGACTTGTTAGACCG
EST: CTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAG AGGAACTGATATGAGTAGTCCTCATGGCATACCTGTTGACTTGTTAGACCGEST: gi|71885171|gb|DT034226.1|DT034226
genomic: CTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAGgtatggcatt ... cattttgcagAGGAACTGATATGAGTAGTCCTCATGGCATACCTGTTGACTTGTTAGACCG
EST: CTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAG AGGAACTGATATGAGTAGTCCTCATGGCATACCTGTTGACTTGTTAGACCGEST: gi|110689388|gb|EE065570.1|EE065570
genomic: CTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAGgtatggcatt ... cattttgcagAGGAACTGATATGAGTAGTCCTCATGGCATACCTGTTGACTTGTTAGACCG
EST: CTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAG AGGAACTGATATGAGTAGTCCTCATGGCATACCTGTTGACTTGTTAGACCG
genomic: CTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAGgtatggcatt ... cattttgcagAGGAACTGATATGAGTAGTCCTCATGGCATACCTGTTGACTTGTTAGACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAGAGCTCACTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAGgtatggcattctacctgtgaaaatgaccaaataacttggaataggatgaaaaaattacctatcttttctaaccattgcagtttttttttttcttttggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat