Sequence
atgc intronic sequence ATGC exonic sequenceTCAGTTTGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTTATTCGTCCATGTGAGGGTGGAGGATCGATCATCCATATTGTTGACCACCTGAATCTTGAGgtttgatttttggcagttggcttcttagatttttcttgcttggcaatggcttatttccttacatctttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os10g33960.2 (Oryza sativa), 5'ss of exon 8
TCAGTTTGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTTATTCGTCCATGTGAGGGTGGAGGATCGATCATCCATATTGTTGACCACCTGAATCTTGAGgtttgatttttggcagttggcttctt-------agatttttcttgcttggcaatggcttatttccttacatctttgcag----------------
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GCAATTTGTAAGAGCTGAGATGCTTCCTAGCGGCTATCTAGTGCGCCCATGCGAGGGTGGTGGCTCCATCGTGCATATTGTGGACCATCTGGATCTTGAGgtgtgatcttcaagttctgcattctttctagttagatgtgctctgcatttgagtcattatttcttttattaatttacttagattctattttacag
upper sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G469551_T02 (Zea mays), 5'ss of exon 9
TCAGTTTGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTTATTCGTCCATGTGAGGGTGGAGGATCGATCATCCATATTGTTGACCACCTGAATCTTGAGgtttgatttttggcagttggcttcttagatttttcttgcttggcaatggctt-atttccttacatctttgcag----------------
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ACAATTTGTAAGAGCTGAGATGCTTCCTAGTGGCTATTTAGTTCGCCAATGTGAGGGTGGGGGCTCGATTGTGCGAATAGTGGACCATCTGGATCTTGACgtatgatattcccgaattctacgtgcttattacactgatgttaaatttccttcatctagttacatattcagtgtgaccatattttacag
upper sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 8
TCAGTTTGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTTATTCGTCCATGTGAGGGTGGAGGATCGATCATCCATATTGTTGACCACCTGAATCTTGAGgttt-gatttttggcagttggcttct-tagatttttcttgc-----ttggcaatggcttatttccttacatctttgcag
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TCAGTTTGTAAGAGCTGAAACACTTCCTAGTGGCTACTTAATCCGACCATGTGAGGGTGGAGGGTCAATCATTCACATAGTGGACCACCTAAATCTGGAGgttttgtttcttaacactgagctaatgcatatttttcctttccttatttacattaatttgcttattgttttcttt-tag
upper sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G20520.1 (Glycine max), 5'ss of exon 8
TCAGTTTGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTTATTCGTCCATGTGAGGGTGGAGGATCGATCATCCATATTGTTGACCACCTGAATCTTGAGgtttgatttt-tggcagttggcttct---tagatttttcttgcttggcaatggcttatttccttacatctttgcag---
||||||||| || ||||||| || ||||||||||| | || || |||||||| |||||||| || ||||| || || || |||||||| ||||| ||||||| ||| | || | ||| | || |||||||| | | | |||| |||| |||
TCAGTTTGTAAGGGCTGAAACACTCCCTAGTGGCTACTTGATCCGACCATGTGAAGGTGGAGGGTCAATCATTCACATAGTAGACCACCTAAATCTCGAGgttttgtttcgtaacactgagctaatgtatatttttttcttttcttatatacattaatttgcttattgttttcttttag
upper sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G60690.1 (Arabidopsis thaliana), 5'ss of exon 8
TCAGTTTGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTTATTCGTCCATGTGAGGGTGGAGGATCGATCATCCATATTGTTGACCACCTGAATCTTGAGgt--ttgatttttggcagttggcttcttagat---ttttc-----ttgcttggc-aatggcttatttccttacatctttgcag-----
||||||||||||||| ||||||||| ||||||| ||| | || | || ||||| ||||| || || || || || ||||| || ||||| ||||||||||| || | | || || |||| | || | ||||| || || | ||| | |||| | | | |||||
TCAGTTTGTGAGAGCAGAAATGCTTTCTAGTGGGTATTTAATAAGGCCTTGTGATGGTGGTGGTTCTATTATTCACATTGTCGATCACCTTAATCTTGAGgtacttaaatcttcacatgtggcattttgtgtgtgttttcaggaatttctagaagaattgattataaacatttgttcttgcattgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721412|gb|FC070776.1|FC070776EST: GTGAGGGTGGAGGATCGATCATCCATATTGTTGACCACCTGAATCTTGAG GCATGGAGTGTGCCAGAGGTGCTGCGACCACTTTATGAATCTTCAAGAGTT
genomic: GTGAGGGTGGAGGATCGATCATCCATATTGTTGACCACCTGAATCTTGAGgtttgatttt ... atctttgcagGCATGGAGTGTGCCAGAGGTGCTGCGACCACTTTATGAATCTTCAAGAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAGTTTGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTTATTCGTCCATGTGAGGGTGGAGGATCGATCATCCATATTGTTGACCACCTGAATCTTGAGgtttgatttttggcagttggcttcttagatttttcttgcttggcaatggcttatttccttacatctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT