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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAATCTAAGGTCTGAAGTTGATGCAGGAAGCATAAAACCCTACTGTTTTGTGGATATTAATGGTCTAAAATTGGCATCACCAGAGAACATTTACAGGgtaatggcttacatgaagtttatctgcttcatattttattactgaattccttttgtttccccataatatgttgtccataatttctttcag

Basic information

species Vitis vinifera
transcript Vv06s0004g02050.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02050.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G41490.1 (Glycine max), 5'ss of exon 7
GAGAAATCTAAGGTCTGAAGTTGATGCAGGAAGCATAAAACCCTACTGTTTTGTGGATATTAATGGTCTAAAATTGGCATCACCAGAGAACATTTACAGGgtaatggcttacatgaagtttatc-tgcttcatattttattactgaattccttttgtttccccataat-atgttgtccataatttctttcag------------------
||||| | | | ||| |||||||||||||||| ||| ||||| |||| ||||||||| ||||||||||| |||||||||||||||||||| ||||| | ||||| |   | |||||||| |||  |   |  |   |  ||| |            |     |||| | ||   |     | ||||||  ||                  
GAGAAGTTTGAAGTCAGAAGTTGATGCAGGAAACATCAAACCATACTCTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCAGAGAATATTTATAAGgtaaag---ttcatgaagtatatagtatcttgtgcctagttattattacataagcatacaatcatacttattccgaggtcattttcttatagtcttgaatactcttccag

upper sequence: Vv06s0004g02050.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G03900.1 (Glycine max), 5'ss of exon 9
GAGAAATCTAAGGTCTGAAGTTGATGCAGGAAGCATAAAACCCTACTGTTTTGTGGATATTAATGGTCTAAAATTGGCATCACCAGAGAACATTTACAGGgtaatggcttacatgaagtttatc-tgcttcatattttattactgaattccttttgtttccccataatatgttgtccataatttctttcag
|||||   | | ||| |||||||||||||||| ||| ||||| |||  ||||||||| ||||||||||| |||||||||||||| ||||| ||||||| ||||| |   | |||||||| |||  |   |  |   |  ||| |       ||  |    |   |  | | | |||   |  |||||||||
GAGAAGCTTGAAGTCAGAAGTTGATGCAGGAAACATCAAACCGTACACTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCCGAGAATATTTACAAGgtaaag---ttcatgaagtatatagtatcttgtgcctagttagtcttgatattccgaggtcattttct-tatagtcttgatattctttcag