Sequence
atgc intronic sequence ATGC exonic sequenceTGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTAAGgtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatatttgtcctggatggtcacttaattggaattattttatgtcccaacttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G161418_T06 (Zea mays), 5'ss of exon 6
TGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTAAGgtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatatttgtcctggatggtcacttaattggaattattttatgtcccaacttcag
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CGAACCAGAACTCTTTCCTGGCCTTATCTATCGGATGAAACAACCAAAGATTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAGgtta-gtcgt-catttcttc-ttgcac--atgcttaataataccgccatttgcttctct-tttcccttcatttcatactccattgtttgtag------------------
upper sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G149238_T03 (Zea mays), 5'ss of exon 7
TGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTAAGgtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatatttgtcctggatggtcacttaattggaattattttatgtcccaacttcag
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CGAACCAGAACTCTTTCCTGGCCTTATCTATCGGATGAAACAACCAAAGATTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAGgtca------gttgtcatttcttgcac--atgcttaataataccgctgtttg-cttcactttttccttcatttcatactccattgtttgtag------------------
upper sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G44460.1 (Glycine max), 5'ss of exon 7
-TGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTAAGgtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatatttgtcctggatggtcacttaattggaattattttatgtcccaacttcag
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ATGAACCAGAGTTGTTTCCTGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACGGGAGCCAAggtataataatggtcttggatcttcc-------catgtaattttacattttggcattt--------tccggctgatgttttcattttggtttcttta--------------
upper sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G28780.1 (Glycine max), 5'ss of exon 8
TGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTAAGgtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatatttgtcctggatggtcacttaattggaattattttatgtcc-caacttcag
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TGAACCAGAGCTGTTTCCCGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCCGGAAAAATTGTTCTGACAGGAGCCAAGgtataataatgg-------------------tcatgggatcttcccatgtgcattttagcatt--tccggctgattcacttacagtgatggtttcattttggtttctttag
upper sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G41330.1 (Glycine max), 5'ss of exon 8
TGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTAAGgtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatatttgtcctggatggtcacttaattggaattattttatgtcccaacttcag
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TGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCAAGgtataataatgg-------------------tcttgggatcttcccatgtacattttagcattttccggctgattcacttacagtgatgttttcattttcgtctctttag
upper sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G55520.1 (Arabidopsis thaliana), 5'ss of exon 8
TGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTAAGgtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatat-ttgtcctggatggtcacttaattggaattattttatgtcccaacttcag
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CGAGCCTGAGCTATTTCCAGGATTGATATATAGGATGAAACTTCCAAAGATTGTACTGCTTATTTTTGTGTCAGGAAAGATTGTTATAACTGGAGCCAAGgtaataa-------ttgaacttctctcaaatgattaaaattgtttccatgaaaatgcttctgtcatcttatgaaatc-ccgaatcag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110724394|gb|EE100183.1|EE100183EST: TTGTGCTGCTTATCTTTGTGTCAAGGAAAATTGTTCTCACTGGAGCTAAA GTGAGAGATGAGACATATACAGCGTTTGAGAACATATACCCTGTCCTTACT
genomic: TTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTAAGgtgatgtcat ... ccaacttcagGTGAGAGATGAGACATATACAGCGTTTGAGAACATATACCCTGTCCTTACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTAAGgtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatatttgtcctggatggtcacttaattggaattattttatgtcccaacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT