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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCATTCTTCCCTTAGTAAGATTATGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTGgtaagtcattttcttcttcagcttttgctcaggtttgttaagctcacaacttttgaagaagcttaactatgtgaaacccattttgatag

Basic information

species Vitis vinifera
transcript Vv05s0102g01180.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0102g01180.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G05470.1 (Glycine max), 5'ss of exon 6
ATGCATTCTTCCCTTAGTAAGATTATGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTGgtaagtcattttcttcttcagcttttgctcaggtttgttaagctcacaacttttgaag----aagcttaactatg-tgaaacccattttgatag
||||  ||||| ||||  | ||| |||||||||||||| || |||| ||| || ||||||||||||||||| ||||| |||  |||     ||||   |||  |      || |    | | ||   |    |     | ||| ||| || ||      ||||||  ||
ATGCTATCTTCTCTTAAAAGGATCATGTCTTTGCCAGATGATACAAGTATTTACTGTGGTCATGAATATACCTTGgttagttgtttctactttcattctttattttc-cctgcttcttttataagcctaagtgttgcgaccttgactttggtgctttgaattttggcag

upper sequence: Vv05s0102g01180.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G13470.1 (Glycine max), 5'ss of exon 6
ATGCATTCTTCCCTTAGTAAGATTATGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTGgtaagtcattttcttcttcagcttttgctcaggtttgttaagctcacaacttttgaagaagcttaactatgtgaaacccattttgatag
|||   ||||| ||||  | ||| ||||||||||| || || |||| ||| || ||||||||||||||||||| ||| |||  ||| | |  ||    |||  |     |  ||    ||  | |        |   | |  |  |||      | ||||  ||
ATGTTATCTTCTCTTAAAAGGATCATGTCTTTGCCTGATGATACAAGTATTTACTGTGGTCATGAATATACATCGgttagttgtttccattctccttctttattttccctgcttcttttctaagcgggctgcaacattgactttggtgctttgaaatttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34319830|gb|CF372584.1|CF372584
EST:     TGTCTTTGNCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTG                         AGCAATTCAAAGTTCGCATTATCTATCGAACCCAAGAATGAGGTCCTCCAG
genomic: TGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTGgtaagtcatt ... attttgatagAGCAATTCAAAGTTTGCATTATCTATCGAACCCAAGAATGAGGTCCTCCAG
EST: gi|77584541|gb|DV221342.1|DV221342
EST:     TGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTG                         AGCAATTCAA-GTTCGCATTATCTATTGAACCCAAGAATGAGGTCCTCCAG
genomic: TGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTGgtaagtcatt ... attttgatagAGCAATTCAAAGTTTGCATTATCTATCGAACCCAAGAATGAGGTCCTCCAG
EST: gi|110404767|gb|EC970289.1|EC970289
EST:     TGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTG                         AGCAATTCGAAGTTCGCATTATCTATCGAACCCAAGAATGAGGTCCTCCAG
genomic: TGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTGgtaagtcatt ... attttgatagAGCAATTCAAAGTTTGCATTATCTATCGAACCCAAGAATGAGGTCCTCCAG
EST: gi|110708395|gb|EE085884.1|EE085884
EST:     TGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTG                         AGCAATTCAAAGTTTGCATTATCTATCGAACCCAAGAATGAGGTCCTCCAG
genomic: TGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTGgtaagtcatt ... attttgatagAGCAATTCAAAGTTTGCATTATCTATCGAACCCAAGAATGAGGTCCTCCAG
EST: gi|110715392|gb|EE093393.1|EE093393
EST:     TGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTG                         AGCAATTCCAAGTTTGCATTATCT
genomic: TGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTGgtaagtcatt ... attttgatagAGCAATTCAAAGTTTGCATTATCT
EST: gi|110688962|gb|EE068114.1|EE068114
EST:     TGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTG                         AGCAATTCAAAGTTCGCATTATCTATTGAACCCAAGAATGAAGTCCTCCAG
genomic: TGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTGgtaagtcatt ... attttgatagAGCAATTCAAAGTTTGCATTATCTATCGAACCCAAGAATGAGGTCCTCCAG