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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCGTTTGAAGAAGTCCCTGAACTTGTAGCTGGCCGTAGAGTGTTTCTTCAGAAAGGGCATGCATATGTTGCTATGAATCAGgtggacattaatggttgctttttcattggtgcacttaatctataaaatgatcaaccttctcactctaattaatgtttatttgccttatttttttctcag

Basic information

species Vitis vinifera
transcript Vv05s0051g00930.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00930.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G28150.1 (Glycine max), 5'ss of exon 8
GTACCGTTTGAAGAAGTCCCTGAACTTGTAGCTGGCCGTAGAGTGTTTCTTCAGAAAGGGCATGCATATGTTGCTATGAATCAGgtggacattaatggttgcttt---ttcattggtgcacttaatctataaaatgatcaaccttctcactctaattaatgtttatttgccttatttttttctcag
||||||||||||||||| || || ||||| ||||| || ||||||||| |  |  ||||  ||||||||||||| ||||||||||| |||     |  || |||    || |||  |||| | ||||   | | |  |     |  | | |||  ||  |||||     | ||      |||  ||
GTACCGTTTGAAGAAGTTCCAGAGCTTGTTGCTGGACGGAGAGTGTTTATAAATCAAGGATATGCATATGTTGCAATGAATCAGgttgactagtgtaattacttactatttattcttgcaatgaatc-gcagagtattggttatagtaaatcttgtttgtgttt--caactttgccaccttcctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37190043|gb|CF609392.1|CF609392
EST:     AGAGTGTTTCTTCATAAAGGGCATGCATATGTTGCTATGAATCAG                         GTGGTTTCTCTTGTTGTCCCACAATTTCGCAGCCTTTTATCTAAGGCACTT
genomic: AGAGTGTTTCTTCAGAAAGGGCATGCATATGTTGCTATGAATCAGgtggacatta ... tttttctcagGTGGTTTCTCTCGTTGTCACACAATTTCGCAGCCATCTATCTAAGGCACTT