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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGTCTATTACCTCTGATGAGGCTTTGAGTTTGGATGAGTTGCCCAAGCGTGCTGTAATACTAGGGGGAGGgtgtgtttctacctcttcattttcctagtgtaccaagctcatcttattggcatgctcatgtttttggttgatatttttttcttgttctttag

Basic information

species Vitis vinifera
transcript Vv05s0051g00870.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00870.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G24170.2 (Arabidopsis thaliana), 5'ss of exon 7
GAGTTGTCTATTACCTCTGATGAGGCTTTGAGTTTGGATGAGTTGCCCAAGCGTGCTGTAATACTAGGGGGAGGgtgtgtttctacctcttcattttcctagtgtaccaagctcatcttattggcatgctcatgtttttggttgatattttt-ttcttgttct--ttag
||| || ||||||| |||||||| |||||||| ||||| || || |||||||||||| || | || || |||||||   | ||| ||||    |||||||  ||  |    |  | | |    ||    |||    |||  |     ||| | ||   ||| |  ||||
GAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAGCGTGCTATAGTGCTTGGAGGAGGgta-atgtcttcctcaatgttttcctcctg--ctgtacctaacatgccagctgtttcaatggtttaatcctcgtttctatttacgttttaattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46917982|gb|CN547311.1|CN547311
EST:     GCTTTGAGTTTGGATGAGTTGCCCAAGCGTGCTGTAATACTAGGGGGAGG                         GTACATTGCTGTTGAGTTTGCTTCAATATGGAATGGGATGGGTGTTGCTGT
genomic: GCTTTGAGTTTGGATGAGTTGCCCAAGCGTGCTGTAATACTAGGGGGAGGgtgtgtttct ... tgttctttagGTACATTGCTGTTGAGTTTGCTTCAATATGGAATGGGATGGGTGTTGCTGT
EST: gi|294967112|gb|GW839987.1|GW839987
EST:     GCTTTGAGTTTGGATGAGTTGCCCAAGCGTGCTGTAATACTAGGGGGAGG                         GTACATTGCTGTTGAGTTTGCTTCAATATGGAATGGGATGGGTGTTGCTGT
genomic: GCTTTGAGTTTGGATGAGTTGCCCAAGCGTGCTGTAATACTAGGGGGAGGgtgtgtttct ... tgttctttagGTACATTGCTGTTGAGTTTGCTTCAATATGGAATGGGATGGGTGTTGCTGT
EST: gi|110729876|gb|EE106312.1|EE106312
EST:     GCTTTGAGTTTGGATGAGTTGCCCAAGCGTGCTGTAATACTAGGGGGAGG                         GTACATTGCTGTTGAGTTTGCTTCAATATGGAATGGGATGGGTGTTGCTGT
genomic: GCTTTGAGTTTGGATGAGTTGCCCAAGCGTGCTGTAATACTAGGGGGAGGgtgtgtttct ... tgttctttagGTACATTGCTGTTGAGTTTGCTTCAATATGGAATGGGATGGGTGTTGCTGT
EST: gi|110699093|gb|EE077335.1|EE077335
EST:     GCTTTGAGTTTGGATGAGTTGCCCAAGCGTGCTGTAATACTAGGGGGAGG                         GTACATTGCTGTTGAGTTTGCTTCA-TATGGAATGGGATGGGTGTTGCTGT
genomic: GCTTTGAGTTTGGATGAGTTGCCCAAGCGTGCTGTAATACTAGGGGGAGGgtgtgtttct ... tgttctttagGTACATTGCTGTTGAGTTTGCTTCAATATGGAATGGGATGGGTGTTGCTGT